Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq15340 104 2e-17 seq10834 104 2e-17 seq4607 91.5 1e-13 >seq15340 Length=28550 Score = 104 bits (114), Expect = 2e-17 Identities = 83/100 (83%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| |||||| |||| |||||||||||||||||| ||| |||| || ||||| | Sbjct 8283 TGTACTCCACGATCTCGGTGCACAGGTTGCTGCATTTGATGGTCCCCAGGTTCTGCTGGT 8342 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 |||| ||||| ||||| | ||| ||| ||||||||||||| Sbjct 8343 TGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTACGG 8382 >seq10834 Length=8617 Score = 104 bits (114), Expect = 2e-17 Identities = 83/100 (83%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| |||||| |||| |||||||||||||||||| ||| |||| || ||||| | Sbjct 5624 TGTACTCCACGATCTCGGTGCACAGGTTGCTGCATTTGATGGTCCCCAGGTTCTGCTGGT 5683 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 |||| ||||| ||||| | ||| ||| ||||||||||||| Sbjct 5684 TGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTACGG 5723 >seq4607 Length=116780 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||||| || | ||| | | | ||||| || || ||||||||||| | ||| || Sbjct 9499 CAAGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCG 9440 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||| || |||| | |||| || | ||| || || ||||| ||||| || Sbjct 9439 GCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCCTC 9380 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || || || |||| | || | || || | |||||||| || | || Sbjct 9379 TTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGT 9320 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 | ||||| ||||||| || || | ||| ||||||||| || Sbjct 9319 AATGGTTTTGCCAGTCAAGGTCTTCACGAAGATCTGCATGCCT 9277 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||||| || | ||| | | | ||||| || || ||||||||||| | ||| || Sbjct 8359 CAAGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCG 8300 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||| || |||| | |||| || | ||| || || ||||| ||||| || Sbjct 8299 GCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCCTC 8240 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || || || |||| | || | || || | |||||||| || | || Sbjct 8239 TTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGT 8180 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | ||||| ||||||| || || | ||| |||||||| Sbjct 8179 AATGGTTTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 8141 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||||| || | ||| | | | ||||| || || ||||||||||| | ||| || Sbjct 8587 CAAGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCG 8528 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||| || |||| | |||| || | ||| || || ||||| ||||| || Sbjct 8527 GCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCCTC 8468 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || || || |||| | || | || || | |||||||| || | || Sbjct 8467 TTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAAGGT 8408 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 | || || ||||| || || || | ||| ||||||||| || Sbjct 8407 AATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATGCCT 8365 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || |||||| || | ||| | | | ||||| || || ||||||||||| | ||| || Sbjct 10411 CAGGCGCAACACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCG 10352 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||| || || | | |||| || | ||| || || ||||| ||||| || Sbjct 10351 GCCATCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCCTC 10292 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || || || |||| | || | || || | |||||||| || | || Sbjct 10291 TTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGT 10232 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 | ||||| ||||||| || || | || ||||||||| || Sbjct 10231 AATGGTTTTGCCAGTCAAGGTCTTCACAAAGATCTGCATGCCT 10189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475470311940000