Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq12361 111 1e-19 seq2823 93.3 4e-14 >seq12361 Length=312203 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | | ||| || |||| ||||||||||| || ||||| Sbjct 239757 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCAAAG 239698 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | || | || ||| ||||| ||||| ||||| | | Sbjct 239697 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGAATCTTGGCCTTCACATTC 239638 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | |||||||||| || || || || || |||| || |||||| Sbjct 239637 TCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTCTTGCCAGTCAGGGTCTTCACA 239578 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 239577 AAGATCTGCAT 239567 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | | ||| || |||| ||||||||||| || ||||| Sbjct 239985 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCAAAG 239926 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | || | || ||| ||||| ||||| ||||| | | Sbjct 239925 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGAATCTTGGCCTTCACATTC 239866 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | |||||||||| || || || || || |||| || || ||| Sbjct 239865 TCAATGGTGTCACTGGGCTCCACCTCCAGGGTTATGGTCTTGCCTGTCAGGGTCTTTACA 239806 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 239805 AAGATCTGCAT 239795 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | | ||| || |||| ||||||||||| || ||||| Sbjct 240213 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCAAAG 240154 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | || | || ||| ||||| ||||| ||||| | | Sbjct 240153 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGAATCTTGGCCTTCACATTC 240094 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | |||||||||| || || || || || |||| || || ||| Sbjct 240093 TCAATGGTGTCACTGGGCTCCACCTCCAGGGTTATGGTCTTGCCTGTCAGGGTCTTTACA 240034 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 240033 AAGATCTGCAT 240023 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | | ||| || |||| ||||||||||| || ||||| Sbjct 240441 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCAAAG 240382 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | || | || ||| ||||| ||||| ||||| | | Sbjct 240381 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGAATCTTGGCCTTCACATTC 240322 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | |||||||||| || || || || || |||| || || ||| Sbjct 240321 TCAATGGTGTCACTGGGCTCCACCTCCAGGGTTATGGTCTTGCCTGTCAGGGTCTTTACA 240262 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 240261 AAGATCTGCAT 240251 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | | ||| || |||| ||||||||||| || ||||| Sbjct 240669 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCAAAG 240610 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | || | || ||| ||||| ||||| ||||| | | Sbjct 240609 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGAATCTTGGCCTTCACATTC 240550 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | |||||||||| || || || || || |||| || || ||| Sbjct 240549 TCAATGGTGTCACTGGGCTCCACCTCCAGGGTTATGGTCTTGCCTGTCAGGGTCTTTACA 240490 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 240489 AAGATCTGCAT 240479 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | | ||| || |||| ||||||||||| || ||||| Sbjct 240897 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCAAAG 240838 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | || | || ||| ||||| ||||| ||||| | | Sbjct 240837 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGAATCTTGGCCTTCACATTC 240778 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | |||||||||| || || || || || |||| || || ||| Sbjct 240777 TCAATGGTGTCACTGGGCTCCACCTCCAGGGTTATGGTCTTGCCTGTCAGGGTCTTTACA 240718 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 240717 AAGATCTGCAT 240707 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | | ||| || |||| ||||||||||| || ||||| Sbjct 241125 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCAAAG 241066 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | || | || ||| ||||| ||||| ||||| | | Sbjct 241065 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGAATCTTGGCCTTCACATTC 241006 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | |||||||||| || || || || || |||| || || ||| Sbjct 241005 TCAATGGTGTCACTGGGCTCCACCTCCAGGGTTATGGTCTTGCCTGTCAGGGTCTTTACA 240946 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 240945 AAGATCTGCAT 240935 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | | ||| || |||| ||||||||||| || ||||| Sbjct 241353 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCAAAG 241294 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | || | || ||| ||||| ||||| ||||| | | Sbjct 241293 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGAATCTTGGCCTTCACATTC 241234 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | |||||||||| || || || || || |||| || || ||| Sbjct 241233 TCAATGGTGTCACTGGGCTCCACCTCCAGGGTTATGGTCTTGCCTGTCAGGGTCTTTACA 241174 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 241173 AAGATCTGCAT 241163 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | | ||| || |||| ||||||||||| || ||||| Sbjct 241581 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCAAAG 241522 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | || | || ||| ||||| ||||| ||||| | | Sbjct 241521 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGAATCTTGGCCTTCACATTC 241462 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | |||||||||| || || || || || |||| || || ||| Sbjct 241461 TCAATGGTGTCACTGGGCTCCACCTCCAGGGTTATGGTCTTGCCTGTCAGGGTCTTTACA 241402 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 241401 AAGATCTGCAT 241391 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | | ||| || |||| ||||||||||| || ||||| Sbjct 241809 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCAAAG 241750 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | || | || ||| ||||| ||||| ||||| | | Sbjct 241749 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGAATCTTGGCCTTCACATTC 241690 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | |||||||||| || || || || || |||| || || ||| Sbjct 241689 TCAATGGTGTCACTGGGCTCCACCTCCAGGGTTATGGTCTTGCCTGTCAGGGTCTTTACA 241630 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 241629 AAGATCTGCAT 241619 >seq2823 Length=399890 Score = 93.3 bits (102), Expect = 4e-14 Identities = 136/193 (70%), Gaps = 16/193 (8%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | | || | | | || ||||||||||| || ||||| Sbjct 388509 CTCTTTCTGGATGTTGTAGTCAGAGAGCGTGCACCCATCTTCCAGCTGCTTCCCTGCAAA 388568 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC-AGAG 35663 |||| |||||||||| ||||| ||| ||| |||||||| | | Sbjct 388569 GATCAGACGCTGCTGGT--------------TCCTTATCC-TGAATTTTTGCTTTTACAT 388613 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | | |||||| || | ||||||||| | ||||| ||||| || |||| ||||||| Sbjct 388614 TCTCAATCGTGTCACTGGGTTCCACCTCAAGGGTGATTGTTTTCCCAGTCAGGGTTTTCA 388673 Query 35724 CAAATATCTGCAT 35736 |||| |||||||| Sbjct 388674 CAAAAATCTGCAT 388686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449714512820000