Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq11181 96.9 5e-15 >seq11181 Length=1903394 Score = 96.9 bits (106), Expect = 5e-15 Identities = 164/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 213994 CCAGATTATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATGGT 214053 |||||| ||| ||||||| | || || ||||| || ||| || | |||||| ||| | Sbjct 1357700 CCAGATGATTAACGGGGAGATGTATCCACCTACGGTGCTGGAAGCTCCAGTGCACATGAT 1357641 Query 214054 TTA-CGAACCCAGCGTTCCCGAAAAGTTACGTTTCGCACTGGGTAACGAGATGTTTGGAC 214112 || | || || | | ||| || || | || |||| | ||| | ||||| | Sbjct 1357640 CTATCCAAAGCA-CATCCCCCTGGAGCAGCGCCTTGCTGTGGGCCAAGAGGTCTTTGGCC 1357582 Query 214113 TCGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGCG 214172 || | || || ||||| ||||||||| ||||||||| | ||||||||| | || || | Sbjct 1357581 TCCTACCAGGCCTCATGATGTACGCCACCATCTGGCTGCGGGAGCACAACCGCGTCTGTG 1357522 Query 214173 ACGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGATCAC 214227 || | ||||| | || ||||| ||| | || || ||||||||||||| ||| Sbjct 1357521 ACATACTGAAGAAGGAACACCCAACCTGGGATGATGAGCAGCTGTTCCAGACCAC 1357467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 721609302960000