Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq5570 111 2e-19 seq1710 107 3e-18 >seq5570 Length=534135 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || || | ||| || ||||| |||||||| ||||| || || || || | Sbjct 272151 CCTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCGGGCATCAGCCCCCGTTTCT 272092 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | |||||| || | |||||||| |||||||||||||| ||||| ||||| || || | Sbjct 272091 TCAACCAAAAAATTGATGCAAAAGAACCAGAAAAGAAGATACCTTCCACTGCAGCGAAAG 272032 Query 39759 CAAC 39762 |||| Sbjct 272031 CAAC 272028 Score = 93.3 bits (102), Expect = 6e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 39307 TTGTGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTT 39366 || |||||| |||||||| | || ||||| || || || || || ||||| || ||||| Sbjct 274438 TTTTGACATCACTCCCATCCTCTGATATTCTCCTACACGCTTTTCAAAAAAGTTGGTTTT 274379 Query 39367 GCCTTCCAATGATATATTTTCCATGAAATCAAACGGATT 39405 |||||||| || |||||||||||||| ||||| ||||| Sbjct 274378 GCCTTCCAGGGAAATATTTTCCATGAAGTCAAATGGATT 274340 >seq1710 Length=997440 Score = 107 bits (118), Expect = 3e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| ||||| | ||| || || || ||||| || ||||| || || | || ||| Sbjct 405047 TCATCTCTGCTAATGAGTTCATTGGAGAAAGTGAGCCCGGGCATCAGTCCTCTTTTCTTG 404988 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||||||||| || ||||||| ||||| |||||||| ||||| || || ||||| ||| Sbjct 404987 AGCCAAAATATAGCTGCAAAAGCGCCAGAGAAGAAGATCCCTTCAACAGCAGCAAAAGCA 404928 Query 39761 AC 39762 || Sbjct 404927 AC 404926 Score = 100 bits (110), Expect = 4e-16 Identities = 86/106 (81%), Gaps = 3/106 (3%) Strand=Plus/Minus Query 39986 CAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAAT 40045 |||||||| | ||| |||||||||||| ||||||||||| || |||||||||||||| Sbjct 395707 CAAAATCT---CACCAGATTTTCATTCACGATTCCATCACTGGCTGCAAAAAATGCCAAG 395651 Query 40046 ACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGT 40091 | |||| ||| ||||| ||||| || ||| ||| || ||||||| Sbjct 395650 ATATGTGAAATGAAATACTTTTCTTCTGGTTTCAGCTTGTTCCAGT 395605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685264512060000