Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq4607 91.5 1e-13 seq12361 84.2 2e-11 seq12296 82.4 6e-11 >seq4607 Length=116780 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 |||||| | || ||||| || | ||| | || || || || || || |||||||| Sbjct 10420 GCCTCCCCTCAGGCGCAACACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 10361 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | |||| | ||||| ||||| || || || | || || | ||| || || || || Sbjct 10360 GAGGGTGCGGCCATCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGG 10301 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||||| || ||||||| |||| | | || | ||||| ||| || || Sbjct 10300 GATGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCAC 10241 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | |||||| |||| || ||||||||||| ||||| Sbjct 10240 CTCCAGGGTAATGGTTTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 10193 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | ||| |||| || | ||| | || || || || || || |||||||| Sbjct 9281 TGCCTCCCCTCAAGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 9222 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | |||| | ||||| ||||| || ||||| | || || | ||| || || || | Sbjct 9221 AGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAACATCAGTCTCTGCTGGTCAGGAG 9162 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||||| || ||||||| |||| | | || | ||||| ||| || | Sbjct 9161 GGATGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCA 9102 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || | || || | ||||| || || || ||||||||||| ||||| Sbjct 9101 CCTCCAAGGTAATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 9053 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | ||| |||| || | ||| | || || || || || || |||||||| Sbjct 9737 TGCCTCCTCTCAAGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 9678 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | |||| | ||||| ||||| || ||||| | || || | ||| || || || | Sbjct 9677 AGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAACATCAGTCTCTGCTGGTCAGGAG 9618 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||||| || ||||||| |||| | | || | ||||| ||| || | Sbjct 9617 GGATGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCA 9558 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || | || || | ||||| || || || ||||||||||| ||||| Sbjct 9557 CCTCCAAGGTAATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 9509 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | ||| |||| || | ||| | || || || || || || |||||||| Sbjct 9965 TGCCTCCTCTCAAGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 9906 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | |||| | ||||| ||||| || ||||| | || || | ||| || || || | Sbjct 9905 AGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAACATCAGTCTCTGCTGGTCAGGAG 9846 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||||| || ||||||| |||| | | || | ||||| ||| || | Sbjct 9845 GGATGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCA 9786 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || | || || | ||||| || || || ||||||||||| ||||| Sbjct 9785 CCTCCAAGGTAATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 9737 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | ||| |||| || | ||| | || || || || || || |||||||| Sbjct 9053 TGCCTCCTCTCAAGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 8994 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | |||| | ||||| ||||| || || || | || || | ||| || || || | Sbjct 8993 AGAGGGTGCGGCCATCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAG 8934 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||||| || ||||||| |||| | | || | ||||| ||| || | Sbjct 8933 GGATGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCA 8874 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || | || || | ||||| || || || ||||||||||| ||||| Sbjct 8873 CCTCCAAGGTAATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 8825 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | ||| |||| || | ||| | || || || || || || |||||||| Sbjct 10193 TGCCTCCTCTCAAGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 10134 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | |||| | ||||| ||||| || || || | || || | ||| || || || | Sbjct 10133 AGAGGGTGCGGCCATCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAG 10074 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||||| || ||||||| |||| | | || | ||||| ||| || | Sbjct 10073 GGATGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCA 10014 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || | || || | ||||| || || || ||||||||||| ||||| Sbjct 10013 CCTCCAAGGTAATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 9965 >seq12361 Length=312203 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | || |||| |||| ||| | || || || || || || |||||||| Sbjct 239795 TGCCTCCCCTCAGGCGCAGCACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 239736 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | |||| |||| || ||||| || || || | || || | ||| || || || | Sbjct 239735 AGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGG 239676 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||||| || |||||| |||| | || | ||||| ||| || | Sbjct 239675 GGATGCCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCA 239616 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | ||||| ||||| || ||||||||||| ||||| Sbjct 239615 CCTCCAGGGTAATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 239567 >seq12296 Length=1996970 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| || | ||| | || || || || || || |||||||| | | |||| || Sbjct 759042 CGCAACACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGGGAGGGTGCGGCCG 759101 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | ||| || || || | || || | | | || || | || | ||||||||| Sbjct 759102 TCTTCCAACTGCTTGCCAGCAAAGATCAGCCTCCGCTGGTCAGAGGGGATGCCCTCTTTA 759161 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| ||||| | | || | ||||| ||| || | || || || || Sbjct 759162 TCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGCTCCGCCTCCAGGGTGATG 759221 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| ||||| || ||||||||||| ||||| Sbjct 759222 GTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 759256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423942642948000