Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq15340 82.4 9e-11 seq10834 82.4 9e-11 >seq15340 Length=28550 Score = 82.4 bits (90), Expect = 9e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 118739 CTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCC 118798 ||| ||||| |||||||| | || || ||||||| ||| | || ||||| || Sbjct 8269 CTCGTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCATTTGATGGTCCC 8328 Query 118799 CAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCC 118858 || ||||| || || ||| ||| || | |||||||| |||||||| || ||||| Sbjct 8329 CAGGTTCTGCTGGTTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTACGGGGTCCC 8388 Query 118859 CGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 118891 ||||||||| ||||||| || || || | ||| Sbjct 8389 CGTCTCCGTCTGGGACTCGATGATGGCGTACCA 8421 >seq10834 Length=8617 Score = 82.4 bits (90), Expect = 9e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 118739 CTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCC 118798 ||| ||||| |||||||| | || || ||||||| ||| | || ||||| || Sbjct 5610 CTCGTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCATTTGATGGTCCC 5669 Query 118799 CAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCC 118858 || ||||| || || ||| ||| || | |||||||| |||||||| || ||||| Sbjct 5670 CAGGTTCTGCTGGTTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTACGGGGTCCC 5729 Query 118859 CGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 118891 ||||||||| ||||||| || || || | ||| Sbjct 5730 CGTCTCCGTCTGGGACTCGATGATGGCGTACCA 5762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 616954820740000