Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq13472 91.5 2e-13 seq11446 87.8 2e-12 seq4478 86.0 7e-12 seq15340 84.2 2e-11 seq10834 84.2 2e-11 >seq13472 Length=435738 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | |||||| | || || ||||| ||||| || |||||||| Sbjct 1848 GTGAAGATGTATCGAGGGCTGGCAGAGTCTTTCCCACCGTGCAGCCTGGTGCCAAACTGA 1907 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| ||| ||||| | ||||||| ||||| || || |||||||| || | | Sbjct 1908 CCAATGGGCTGGAGCAGGTTCAAGTTGTTGCTACCCACAAAGTTTTGAGCCAAGTTGATA 1967 Query 152149 ATCGT 152153 || || Sbjct 1968 ATAGT 1972 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| ||| |||| || || ||||| || | || || || || Sbjct 1848 GTGAAGATGTATCGAGGGCTGGCAGAGTCTTTCCCACCGTGCAGCCTGGTGCCAAACTGA 1907 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | ||||||| ||||||| ||||||||||||||||||||||||| | Sbjct 1908 CCAATGGGCTGGAGCAGGTTCAAGTTGTTGCTACCCACAAAGTTTTGAGCCAAGTTGATA 1967 Query 117425 ATCGT 117429 || || Sbjct 1968 ATAGT 1972 >seq11446 Length=7882 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 ||| ||| | || || ||||| || ||||| |||||||||||| |||||||||||||| | Sbjct 789 CCTCCTCCTCGCCCCGATGCCGACTGCGTCCACGGCTCAGATCTTGGGCAACAACGAGTC 848 Query 55552 GTTCGAGCCGTACACGACCAACATCTAC 55579 | ||||| ||||| | |||||||||| Sbjct 849 CATTGAGCCCTACACCAGCAACATCTAC 876 >seq4478 Length=1549178 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| ||||||||||||||||||||| ||| | ||||| || || Sbjct 885438 GTGAAAATATAACGAGGACTTGCAGCATCCTTGCCACCATGAAGCCTAGTACCAAACTGA 885379 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | | | ||||| || || ||||| ||||||||||||||| Sbjct 885378 CCAATAGGCTGTAGCAAACTGACATTGTTACTTCCAACGAAGTTCTGAGCCAAGTTGACA 885319 Query 117425 ATCGT 117429 || || Sbjct 885318 ATGGT 885314 >seq15340 Length=28550 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 53849 TGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGAT 53908 ||| | || ||| || || |||| ||||||||| || ||||||||| ||||||||| Sbjct 8421 TGGTACGCCATCATCGAGTCCCAGACGGAGACGGGGACCCCGTACATGCTCTACAAGGAC 8362 Query 53909 TCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 || |||| ||||||||||||| ||||| | || |||||||| |||||| Sbjct 8361 TCCTGCAACCGGAAGAGCAACCAGCAGAACCTGGGGACCATCAAATGCAGCAAC 8308 >seq10834 Length=8617 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 53849 TGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGAT 53908 ||| | || ||| || || |||| ||||||||| || ||||||||| ||||||||| Sbjct 5762 TGGTACGCCATCATCGAGTCCCAGACGGAGACGGGGACCCCGTACATGCTCTACAAGGAC 5703 Query 53909 TCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 || |||| ||||||||||||| ||||| | || |||||||| |||||| Sbjct 5702 TCCTGCAACCGGAAGAGCAACCAGCAGAACCTGGGGACCATCAAATGCAGCAAC 5649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545906101700000