Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq12296 82.4 5e-11 >seq12296 Length=1996970 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || ||||||||||| | ||| || ||| ||||| || ||||| || || | Sbjct 759030 CCACCCCTGAGACGCAACACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGGG 759089 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| | || || || ||||| || | | | | ||||| | || Sbjct 759090 AGGGTGCGGCCGTCTTCCAACTGCTTGCCAGCAAAGATCAGCCTCCGCTGGTCAGAGGGG 759149 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||| || || |||| || | ||| ||| | ||| ||||| | |||| | Sbjct 759150 ATGCCCTCTTTATCCTGGATC-TTGGCTTTCACGTTCTCAATGGTGTCACTGGGCTCCGC 759208 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| ||| || || || || || | || |||||||| ||||||||| Sbjct 759209 CTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 759257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 313995050619500