Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq12361 123 2e-23 seq12296 109 5e-19 >seq12361 Length=312203 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| |||||||| || ||||| |||||| | || || || || ||||| || Sbjct 239794 CATGCAGATCTTTGTAAAGACCCTGACAGGCAAGACCATAACCCTGGAGGTGGAGCCCAG 239853 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || || |||||||||||||| ||||| || || || || Sbjct 239854 TGACACCATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGCATCCCCCCTGACCA 239913 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| || |||| ||| | ||| | || || ||||| Sbjct 239914 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCTGACTACAA 239973 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||| || ||| | ||| |||| |||| || |||| ||||| Sbjct 239974 CATCCAGAAGGAATCCACCCTGCATCTGGTGCTGCGCCTGAGGGGAGGCAT 240024 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| |||||||| || ||||| |||||| | || || || || ||||| || Sbjct 240022 CATGCAGATCTTTGTAAAGACCCTGACAGGCAAGACCATAACCCTGGAGGTGGAGCCCAG 240081 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || || |||||||||||||| ||||| || || || || Sbjct 240082 TGACACCATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGCATCCCCCCTGACCA 240141 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| || |||| ||| | ||| | || || ||||| Sbjct 240142 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCTGACTACAA 240201 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||| || ||| | ||| |||| |||| || |||| ||||| Sbjct 240202 CATCCAGAAGGAATCCACCCTGCATCTGGTGCTGCGCCTGAGGGGAGGCAT 240252 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| |||||||| || ||||| |||||| | || || || || ||||| || Sbjct 240250 CATGCAGATCTTTGTAAAGACCCTGACAGGCAAGACCATAACCCTGGAGGTGGAGCCCAG 240309 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || || |||||||||||||| ||||| || || || || Sbjct 240310 TGACACCATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGCATCCCCCCTGACCA 240369 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| || |||| ||| | ||| | || || ||||| Sbjct 240370 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCTGACTACAA 240429 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||| || ||| | ||| |||| |||| || |||| ||||| Sbjct 240430 CATCCAGAAGGAATCCACCCTGCATCTGGTGCTGCGCCTGAGGGGAGGCAT 240480 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| |||||||| || ||||| |||||| | || || || || ||||| || Sbjct 240478 CATGCAGATCTTTGTAAAGACCCTGACAGGCAAGACCATAACCCTGGAGGTGGAGCCCAG 240537 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || || |||||||||||||| ||||| || || || || Sbjct 240538 TGACACCATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGCATCCCCCCTGACCA 240597 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| || |||| ||| | ||| | || || ||||| Sbjct 240598 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCTGACTACAA 240657 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||| || ||| | ||| |||| |||| || |||| ||||| Sbjct 240658 CATCCAGAAGGAATCCACCCTGCATCTGGTGCTGCGCCTGAGGGGAGGCAT 240708 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| |||||||| || ||||| |||||| | || || || || ||||| || Sbjct 240706 CATGCAGATCTTTGTAAAGACCCTGACAGGCAAGACCATAACCCTGGAGGTGGAGCCCAG 240765 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || || |||||||||||||| ||||| || || || || Sbjct 240766 TGACACCATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGCATCCCCCCTGACCA 240825 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| || |||| ||| | ||| | || || ||||| Sbjct 240826 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCTGACTACAA 240885 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||| || ||| | ||| |||| |||| || |||| ||||| Sbjct 240886 CATCCAGAAGGAATCCACCCTGCATCTGGTGCTGCGCCTGAGGGGAGGCAT 240936 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| |||||||| || ||||| |||||| | || || || || ||||| || Sbjct 240934 CATGCAGATCTTTGTAAAGACCCTGACAGGCAAGACCATAACCCTGGAGGTGGAGCCCAG 240993 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || || |||||||||||||| ||||| || || || || Sbjct 240994 TGACACCATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGCATCCCCCCTGACCA 241053 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| || |||| ||| | ||| | || || ||||| Sbjct 241054 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCTGACTACAA 241113 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||| || ||| | ||| |||| |||| || |||| ||||| Sbjct 241114 CATCCAGAAGGAATCCACCCTGCATCTGGTGCTGCGCCTGAGGGGAGGCAT 241164 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| |||||||| || ||||| |||||| | || || || || ||||| || Sbjct 241162 CATGCAGATCTTTGTAAAGACCCTGACAGGCAAGACCATAACCCTGGAGGTGGAGCCCAG 241221 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || || |||||||||||||| ||||| || || || || Sbjct 241222 TGACACCATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGCATCCCCCCTGACCA 241281 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| || |||| ||| | ||| | || || ||||| Sbjct 241282 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCTGACTACAA 241341 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||| || ||| | ||| |||| |||| || |||| ||||| Sbjct 241342 CATCCAGAAGGAATCCACCCTGCATCTGGTGCTGCGCCTGAGGGGAGGCAT 241392 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| |||||||| || ||||| |||||| | || || || || ||||| || Sbjct 241390 CATGCAGATCTTTGTAAAGACCCTGACAGGCAAGACCATAACCCTGGAGGTGGAGCCCAG 241449 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || || |||||||||||||| ||||| || || || || Sbjct 241450 TGACACCATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGCATCCCCCCTGACCA 241509 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| || |||| ||| | ||| | || || ||||| Sbjct 241510 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCTGACTACAA 241569 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||| || ||| | ||| |||| |||| || |||| ||||| Sbjct 241570 CATCCAGAAGGAATCCACCCTGCATCTGGTGCTGCGCCTGAGGGGAGGCAT 241620 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| |||||||| || ||||| |||||| | || || || || ||||| || Sbjct 241618 CATGCAGATCTTTGTAAAGACCCTGACAGGCAAGACCATAACCCTGGAGGTGGAGCCCAG 241677 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || || |||||||||||||| ||||| || || || || Sbjct 241678 TGACACCATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGCATCCCCCCTGACCA 241737 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| || |||| ||| | ||| | || || ||||| Sbjct 241738 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCTGACTACAA 241797 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || ||||| || ||| | ||| |||| ||||| | ||||||| Sbjct 241798 CATCCAGAAGGAATCCACCCTGCATCTGGTGCTGCGTCTCAGGGGTGG 241845 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| |||||| | ||||| || || ||||| || Sbjct 239567 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATTACCCTGGAGGTGGAGCCCAGT 239626 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || |||||||||||||| ||||| || || || || Sbjct 239627 GACACCATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGCATCCCCCCTGACCAG 239686 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || |||| ||| | ||| | || || |||||| Sbjct 239687 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCTGACTACAAC 239746 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || ||| | ||| |||| |||| || |||| ||||| Sbjct 239747 ATCCAGAAGGAATCCACCCTGCATCTGGTGCTGCGCCTGAGGGGAGGCAT 239796 >seq12296 Length=1996970 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||| | ||||| || || || || |||||| | ||||| | || | ||| || Sbjct 759484 ATGCAGGTCTTTGTGAAGACCCTAACTGGCAAGACCATTACCTTGGAGGCGGAGCCCAGT 759425 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| | || ||||| || ||||| || ||||| || ||||||||| Sbjct 759424 GACACCATTGAGAACATGAAGGCCAAAATCCAGGACAAGGAGGGCATTCCTCCCGATCAA 759365 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||||| | ||| | || || |||| Sbjct 759364 CAGAGGCTGATCTTTGCTGGCAAGCAGTTGGAAGACGGCCGCACCCTCTCTGACCACAAA 759305 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| |||||| | ||| | || ||||| || |||| ||||| Sbjct 759304 ATCCAGAAGGAATCGACCCTGCATCTTGTGTTGCGCCTGAGGGGAGGCAT 759255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433906533759500