Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq15656 89.7 5e-13 >seq15656 Length=1245196 Score = 89.7 bits (98), Expect = 5e-13 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 ||||| ||||| |||| || || | ||||| ||||| ||||| || || || || ||| Sbjct 954122 TGAGCAATCATCAACGTAAGAAGCGAATAACTTGCAATATTGAAGGGTACTCCCAAACCC 954181 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 |||||||| || || ||||| | ||| ||||| || || || || || ||||| ||| Sbjct 954182 ATGTCTCCTGACCGCTGATACAACTGACAGGAGAGTTCACCGTTTAAAACATAGAACTGG 954241 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCAT--CAGAG 6773 ||||| | || || || || | ||||| ||||| Sbjct 954242 CAGAGAGCATGACATGGAGGCAAGGCCATTGCAGAG 954277 Score = 89.7 bits (98), Expect = 5e-13 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 34572 CTCTG--ATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGA 34629 ||||| ||||| | || || || || | |||||||| ||||| || || || || Sbjct 954277 CTCTGCAATGGCCTTGCCTCCATGTCATGCTCTCTGCCAGTTCTATGTTTTAAACGGTGA 954218 Query 34630 GCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACAT 34689 || ||||| ||| | ||||| || || ||||||||||| || || || || ||||| || Sbjct 954217 ACTCTCCTGTCAGTTGTATCAGCGGTCAGGAGACATGGGTTTGGGAGTACCCTTCAATAT 954158 Query 34690 TGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||| ||||| | || || |||| ||||| ||||| Sbjct 954157 TGCAAGTTATTCGCTTCTTACGTTGATGATTGCTCA 954122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447189371880000