Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq4511 104 2e-17 seq15656 87.8 1e-12 >seq4511 Length=590425 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 3244 AGTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGA 3303 ||| || || |||||||||||||| | ||| ||||||||| | ||||| || ||||| || Sbjct 447953 AGTCGTGGAAGAGCTCTTCCGAGACGAGGTCAACTGGGGGAGGATTGTGGCCTTCTTCGA 448012 Query 3304 GTTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAA 3363 ||||| || | ||||| ||||| ||||||| | | | || | | || || |||| Sbjct 448013 ATTTGGGGGCATGATGTGCGTGGAGAGCGTCAGTCGGGAGATGTCTCCTCTGGTGGACAG 448072 Query 3364 CATTGCCGCGTGGATGACAGACCAGCTGGGTGGAGAGGTTGGTTTGTGGATCCAAGAGAA 3423 || |||| ||||||||| || | ||| ||| | | | |||||||| || || Sbjct 448073 TATCGCCGTGTGGATGACGGAGTACCTGAACGGACACCTGCGGCATTGGATCCAGGACAA 448132 Query 3424 CGGAGGATGG 3433 |||||| ||| Sbjct 448133 CGGAGGTTGG 448142 >seq15656 Length=1245196 Score = 87.8 bits (96), Expect = 1e-12 Identities = 112/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 118537 CCTGTCAGGTGAGCAATCATGTATGTCAACAAACTG-TAGCTGGCTACATTAAAAGGAAC 118595 ||||| | |||||||||||| | || || || | || || || | ||| || || || Sbjct 954113 CCTGTGATGTGAGCAATCATCAACGT-AAGAAGCGAATAACTTGCAATATTGAAGGGTAC 954171 Query 118596 ACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAAC 118655 |||| |||||||||| |||| | ||| ||||| || || ||||| || |||||| ||| Sbjct 954172 TCCCAAACCCATGTCTCCTGACCGCTGATACAACTGACAGGAGAGTTCACCGTTTAAAAC 954231 Query 118656 ATAAAACTGACTTATGATGTGACATGGAGGCA 118687 ||| ||||| | | ||||||||||||| Sbjct 954232 ATAGAACTGGCAGAGAGCATGACATGGAGGCA 954263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413509450006000