Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq4607 107 2e-18 >seq4607 Length=116780 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 39056 AGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG 39115 ||||||| || | ||| ||||| | ||| || ||| ||| || || || || || || | Sbjct 10421 AGCCTCCCCTCAGGCGCAACACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 10362 Query 39116 CAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGG 39175 || || || | || |||||||| ||||| ||||| || || | ||||||||||| | Sbjct 10361 AGAGGGTGCGGCCATCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAG 10302 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | | || |||||||||| ||| || || | || | | || || || | ||||| Sbjct 10301 GGATGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCA 10242 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | |||| || || |||| || |||| || || |||||||| ||||| Sbjct 10241 CCTCCAGGGTAATGGTTTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 10193 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||||||||| ||||| | ||| | ||| || ||| ||| || || || || || || Sbjct 9055 CATGCCTCCTCTCAAGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 8996 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 | || || || | || |||||||| ||||| ||||| || || | ||||||||||| Sbjct 8995 AGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGG 8936 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 || | || |||||||||| ||| || || | || | | || || || | ||| Sbjct 8935 AGGGATGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTC 8876 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| |||| || || | || || || || || || |||||||| ||||| Sbjct 8875 CACCTCCAAGGTAATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 8825 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||||||||| ||||| | ||| | ||| || ||| ||| || || || || || || Sbjct 9511 CATGCCTCCTCTCAAGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 9452 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 | || || || | || |||||||| ||||| ||||| || || | ||||||||||| Sbjct 9451 AGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGG 9392 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 || | || |||||||||| ||| || || | || | | || || || | ||| Sbjct 9391 AGGGATGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTC 9332 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| |||| || || |||| || |||| || || || ||||| ||||| Sbjct 9331 CACCTCCAGGGTAATGGTTTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 9281 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||||||||| ||||| | ||| | ||| || ||| ||| || || || || || || Sbjct 10195 CATGCCTCCTCTCAAGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 10136 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 | || || || | || |||||||| ||||| ||||| || || | ||||||||||| Sbjct 10135 AGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGG 10076 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 || | || |||||||||| ||| || || | || | | || || || | ||| Sbjct 10075 AGGGATGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTC 10016 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| |||| || || | || || || || || || |||||||| ||||| Sbjct 10015 CACCTCCAAGGTAATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 9965 Score = 102 bits (112), Expect = 7e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || ||||| | ||| | ||| || ||| ||| || || || || || || Sbjct 8371 CATGCCTCCCCTCAAGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 8312 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 | || || || | || |||||||| ||||| ||||| || || | ||||||||||| Sbjct 8311 AGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGG 8252 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 || | || |||||||||| ||| || || | || | | || || || | ||| Sbjct 8251 AGGGATGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTC 8192 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 ||| |||| || || |||| || |||| || || || ||||| ||||| || Sbjct 8191 CACCTCCAGGGTAATGGTTTTGCCAGTCAAGGTCTTCACGAAGATCTGCATTTT 8138 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||||||||| ||||| | ||| | ||| || ||| ||| || || || || || || Sbjct 8599 CATGCCTCCTCTCAAGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 8540 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 | || || || | || |||||||| ||||| ||||| || || | ||||||||||| Sbjct 8539 AGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGG 8480 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 || | || |||||||||| ||| || || | || | | || || || | ||| Sbjct 8479 AGGGATGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTC 8420 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| |||| || || | || || || || || || || ||||| ||||| Sbjct 8419 CACCTCCAAGGTAATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 8369 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||||||||| ||||| | ||| | ||| || ||| ||| || || || || || || Sbjct 8827 CATGCCTCCTCTCAAGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 8768 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 | || | || | || |||||||| ||||| ||||| || || | ||||||||||| Sbjct 8767 AGAGAGGGGGCGGCCATCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGG 8708 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 || | || |||||||||| ||| || || | || | | || || || | ||| Sbjct 8707 AGGGATGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTC 8648 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| |||| || || | || || || || || || || ||||| ||||| Sbjct 8647 CACCTCCAGGGTAATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 8597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428543080839500