Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2823 84.2 1e-11 seq4607 82.4 5e-11 >seq2823 Length=399890 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/197 (69%), Gaps = 14/197 (7%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || |||||||| || || ||||| ||||| || || || || ||| Sbjct 388686 ATGCAGATTTTTGTGAAAACCCTGACTGGGAAAACAATCACCCTTGAGGTGGAACCCAGT 388627 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | ||||| ||||||| || || ||| |||| Sbjct 388626 GACACGATTGAGAATGTAAAAGCAAAAATTCAGGATAAGGAA---------CCAG----- 388581 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| || || || |||||||| | |||| | || |||||| Sbjct 388580 CAGCGTCTGATCTTTGCAGGGAAGCAGCTGGAAGATGGGTGCACGCTCTCTGACTACAAC 388521 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 388520 ATCCAGAAAGAGTCCAC 388504 >seq4607 Length=116780 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| || ||| | || || ||||| || || || || || || || Sbjct 8138 AAAATGCAGATCTTCGTGAAGACCTTGACTGGCAAAACCATTACCCTGGAGGTGGAGCCC 8197 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| |||| | | || || || |||||||| || | || || || Sbjct 8198 AGTGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCCGAC 8257 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||||||||| || || ||||| | ||||| | || ||| Sbjct 8258 CAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCTGACTAC 8317 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || |||||||| Sbjct 8318 AACATCCAGAAGGAGTCCAC 8337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337220717282000