Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1710 102 7e-17 seq5570 84.2 2e-11 >seq1710 Length=997440 Score = 102 bits (112), Expect = 7e-17 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 |||| ||||||||||| ||||| || || || || | |||||||| | ||||| || | Sbjct 405049 CTTCATCTCTGCTAATGAGTTCATTGGAGAAAGTGAGCCCGGGCATCAGTCCTCTTTTCT 404990 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 | |||||||||||||| ||||| | ||||| ||||| || ||||| || || ||||| | Sbjct 404989 TGAGCCAAAATATAGCTGCAAAAGCGCCAGAGAAGAAGATCCCTTCAACAGCAGCAAAAG 404930 Query 4690 CTAC 4693 | || Sbjct 404929 CAAC 404926 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 4938 TTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTAC 4997 ||||| || || || || ||||||||||||||||| ||||| | ||| || || || ||| Sbjct 395692 TTTTCATTCACGATTCCATCACTGGCTGCAAAAAATGCCAAGATATGTGAAATGAAATAC 395633 Query 4998 TGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 | ||| || || || || || ||||||||||| | || || | ||| ||||| Sbjct 395632 TTTTCTTCTGGTTTCAGCTTGTTCCAGTGGGGAAGGTCCTTTGATAAGTCAAC 395580 >seq5570 Length=534135 Score = 84.2 bits (92), Expect = 2e-11 Identities = 92/121 (76%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 4813 CTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAA 4872 ||||| | |||||||| || || | ||||||||||| ||||| || ||||| ||||||| Sbjct 271373 CTTGA-TGTAAGTGTCAATAAGCAAACTATACATTTCTGAATGGATGTTTTCCATAGCAA 271315 Query 4873 TCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTA 4932 |||| || || || || || | ||| ||||| || || ||||| | | |||| ||| | Sbjct 271314 TCTGGAACCCATAGAAACAGCGAGCCTCTGTGACCTGTACTTCCTGGCTGAATCGTTCCA 271255 Query 4933 C 4933 | Sbjct 271254 C 271254 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || |||||||| || ||||| || ||||| || | ||||||||| | || | || || Sbjct 272149 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCGGGCATCAGCCCCCGTTTCTTC 272090 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 | |||||| || | ||||| || ||||||||||| || ||||| || || || || || Sbjct 272089 AACCAAAAAATTGATGCAAAAGAACCAGAAAAGAAGATACCTTCCACTGCAGCGAAAGCA 272030 Query 4692 ACTA 4695 |||| Sbjct 272029 ACTA 272026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426052906269500