Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1710 111 2e-19 seq5570 100 4e-16 seq15340 89.7 7e-13 seq10834 89.7 7e-13 seq11446 87.8 2e-12 >seq1710 Length=997440 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 48163 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTT 48222 |||||||||| ||||| | ||| || || || ||||| |||||||| ||||| | ||| | Sbjct 405049 CTTCATCTCTGCTAATGAGTTCATTGGAGAAAGTGAGCCCGGGCATCAGTCCTCTTTTCT 404990 Query 48223 TGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATG 48282 ||||||||||||| || || |||| ||||| ||||| || ||||| || || ||||| | Sbjct 404989 TGAGCCAAAATATAGCTGCAAAAGCGCCAGAGAAGAAGATCCCTTCAACAGCAGCAAAAG 404930 Query 48283 C 48283 | Sbjct 404929 C 404929 Score = 93.3 bits (102), Expect = 6e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 48638 TACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACT 48697 ||||||||| ||||||| || || || | ||||| || ||||| |||||||| ||| Sbjct 394419 TACTTCTTCCACTGTCCAGAAGGAAGCTTGAGCTTTCTTGTACATTTTCCATATGTCAGG 394360 Query 48698 GTATTGGATTGGGAAAATAACAAATCTATTTGGATTTTTTGCAAGGATAGGTTC 48751 || |||||||||||||| ||||||| | |||||||||| | || |||||| Sbjct 394359 ATACTGGATTGGGAAAATGACAAATCGACGTGGATTTTTTCTTAAGAGAGGTTC 394306 >seq5570 Length=534135 Score = 100 bits (110), Expect = 4e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| |||||||| | |||||||| || ||||| || || ||||| || ||||||||| Sbjct 274434 GACATCACTCCCATCCTCTGATATTCTCCTACACGCTTTTCAAAAAAGTTGGTTTTGCCT 274375 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATT 47929 |||| || ||||||||||| || ||||||||||| Sbjct 274374 TCCAGGGAAATATTTTCCATGAAGTCAAATGGATT 274340 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| || || | ||| || ||||| ||||| |||||||| || || ||||| || Sbjct 272149 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCGGGCATCAGCCCCCGTTTCTTC 272090 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 | |||||| |||| || ||||| ||||||||||| || ||||| || || || || || Sbjct 272089 AACCAAAAAATTGATGCAAAAGAACCAGAAAAGAAGATACCTTCCACTGCAGCGAAAGC 272031 >seq15340 Length=28550 Score = 89.7 bits (98), Expect = 7e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792 |||||||| || || || || |||||||| || ||||| || || ||||||||||| Sbjct 8294 ATCTCGGTGCACAGGTTGCTGCATTTGATGGTCCCCAGGTTCTGCTGGTTGCTCTTCCGG 8353 Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAAT 77851 ||||| |||||||| || || || |||| ||||| || || |||| || ||||| || Sbjct 8354 TTGCAGGAGTCCTTGTAGAGCATGTACGGGGTCCCCGTCTCCGTCTGGGACTCGATGAT 8412 >seq10834 Length=8617 Score = 89.7 bits (98), Expect = 7e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792 |||||||| || || || || |||||||| || ||||| || || ||||||||||| Sbjct 5635 ATCTCGGTGCACAGGTTGCTGCATTTGATGGTCCCCAGGTTCTGCTGGTTGCTCTTCCGG 5694 Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAAT 77851 ||||| |||||||| || || || |||| ||||| || || |||| || ||||| || Sbjct 5695 TTGCAGGAGTCCTTGTAGAGCATGTACGGGGTCCCCGTCTCCGTCTGGGACTCGATGAT 5753 >seq11446 Length=7882 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || ||||| |||||||| ||||||||| || | || || || || || || | Sbjct 6653 TCCACCCATAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGCTCTGCGATGTGGATGT 6594 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 ||| ||||| || || ||||||||||| |||| || || ||||| || | | ||||| Sbjct 6593 TCAGGGACTGGCTCTGGTCGATGAAAGCCCCTCGGTCCGCGGCCATCTTGAGCACGGTCT 6534 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | || | || ||||| | || ||| | | || || | || ||||||| Sbjct 6533 TCTGGGAGATCTCCCAGACGGTCTTGTAGAGCTGCTTCAGGTCCTCTGGAA 6483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693005936560000