Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1710 111 2e-19 seq5570 102 1e-16 seq11446 84.2 3e-11 >seq1710 Length=997440 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| ||||| | ||| || || || |||||||| ||||| ||||| | || | Sbjct 405049 CTTCATCTCTGCTAATGAGTTCATTGGAGAAAGTGAGCCCGGGCATCAGTCCTCTTTTCT 404990 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 |||||||||||||||| || |||| ||||| ||||| || ||||| ||||| || || | Sbjct 404989 TGAGCCAAAATATAGCTGCAAAAGCGCCAGAGAAGAAGATCCCTTCAACAGCAGCAAAAG 404930 Query 46772 CGAC 46775 | || Sbjct 404929 CAAC 404926 Score = 86.0 bits (94), Expect = 9e-12 Identities = 84/106 (79%), Gaps = 3/106 (3%) Strand=Plus/Minus Query 46999 CAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAAT 47058 ||||||| ||| || ||| |||||||| ||||||||||| || |||||||||||||| Sbjct 395707 CAAAATC--TCAC-CAGATTTTCATTCACGATTCCATCACTGGCTGCAAAAAATGCCAAG 395651 Query 47059 ACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGT 47104 | |||| ||| ||||| ||||| || | |||| || ||||||| Sbjct 395650 ATATGTGAAATGAAATACTTTTCTTCTGGTTTCAGCTTGTTCCAGT 395605 >seq5570 Length=534135 Score = 102 bits (112), Expect = 1e-16 Identities = 105/137 (77%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 46285 TAAAAGTCGACATCTAAAGAAAAATGATTATCTTC---TTGTGACATAACTCCCATTTTT 46341 || || ||| |||| |||| ||| |||||| || |||||| |||||||| | Sbjct 274476 TAGAATTCGGCATCCAAAGTGAAAGAGTTATCTGTGGGTTTTGACATCACTCCCATCCTC 274417 Query 46342 TGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCC 46401 || ||||| |||||||| || || ||||| || ||||||||||||| || ||||||||| Sbjct 274416 TGATATTCTCCTACACGCTTTTCAAAAAAGTTGGTTTTGCCTTCCAGGGAAATATTTTCC 274357 Query 46402 ATAAAATCAAACGGATT 46418 || || ||||| ||||| Sbjct 274356 ATGAAGTCAAATGGATT 274340 Score = 89.7 bits (98), Expect = 7e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| || || | ||| || ||||| ||||| || ||||| || || || || || Sbjct 272149 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCGGGCATCAGCCCCCGTTTCTTC 272090 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 | |||||| || | || ||||| ||||||||||| || ||||| || || ||||| || Sbjct 272089 AACCAAAAAATTGATGCAAAAGAACCAGAAAAGAAGATACCTTCCACTGCAGCGAAAGCA 272030 Query 46774 AC 46775 || Sbjct 272029 AC 272028 >seq11446 Length=7882 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || ||||| |||||||| || |||||| || | || || || || || || | Sbjct 6653 TCCACCCATAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGCTCTGCGATGTGGATGT 6594 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 ||| ||||| || || ||||||||||| |||| || || ||||| || | | ||||| Sbjct 6593 TCAGGGACTGGCTCTGGTCGATGAAAGCCCCTCGGTCCGCGGCCATCTTGAGCACGGTCT 6534 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | || | || ||||| | || ||| | | || || | || ||||||| Sbjct 6533 TCTGGGAGATCTCCCAGACGGTCTTGTAGAGCTGCTTCAGGTCCTCTGGAA 6483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711227813280000