Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq15702 91.5 2e-13 seq5570 87.8 2e-12 >seq15702 Length=405559 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 8531 GGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATT 8590 || |||||||||| | |||| | ||||| || ||||| ||||||||| ||||||||| Sbjct 221515 GGCCTCGAACTCCCGGGCTCAAGCGATCCTCCGGCCTCAGCCTCCCAAGAAGCTGGGATT 221574 Query 8591 ACAGGCATGAGCCACCGCGCCTGGC 8615 ||||||| ||||||||||||| ||| Sbjct 221575 ACAGGCACGAGCCACCGCGCCCGGC 221599 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 8387 GCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTA 8446 || ||| || |||| |||||||| |||||| || |||| |||||||||||| || | Sbjct 221506 GCCCACGGCGGCCTCGAACTCCCGGGCTCAAGCGATCCTCCGGCCTCAGCCTCCCAAGAA 221565 Query 8447 GCTGGGATTACAGGCAAAAGCCACCACGCC 8476 |||||||||||||||| ||||||| |||| Sbjct 221566 GCTGGGATTACAGGCACGAGCCACCGCGCC 221595 >seq5570 Length=534135 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 23779 ATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGA 23838 || || || ||||| || |||||||||||||| ||||| || ||||| ||||||||||| Sbjct 271369 ATGTAAGTGTCAATAAGCAAACTATACATTTCTGAATGGATGTTTTCCATAGCAATCTGG 271310 Query 23839 AACCCATAAAAACATCTAGCTTC 23861 |||||||| ||||| | ||| || Sbjct 271309 AACCCATAGAAACAGCGAGCCTC 271287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520239688100000