Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq11181 150 3e-31 seq15190 136 6e-27 >seq11181 Length=1903394 Score = 150 bits (166), Expect = 3e-31 Identities = 186/252 (74%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 || || | |||||| | |||||||||||||| ||||| ||| ||| ||| ||||| Sbjct 1357449 CCAATGAGGATGAGCCTTGTGGTCTGGAACAGCTGCTCATCATCCCAGGTTGGGTGTTCC 1357508 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 | ||||| | || || || | |||||| |||| |||||||| ||||||||||||||| Sbjct 1357509 TTCTTCAGTATGTCACAGACGCGGTTGTGCTCCCGCAGCCAGATGGTGGCGTACATCATG 1357568 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACT 9414 || || |||| |||||||| ||||||| || ||||| || ||| | ||| | Sbjct 1357569 AGGCCTGGTAGGAGGCCAAAGACCTCTTGGCCCACAGCAAGGCGCTGCTCCAGGGGGATG 1357628 Query 9415 TCGGGAGGATAGATCATGTGCACCTGGA-CGTCTTTGACCGAGGGGGGATACATTTCACC 9473 | |||||||||||||||| ||||| | || |||| || |||||||| || || Sbjct 1357629 TGCTTTGGATAGATCATGTGCA-CTGGAGCTTCCAGCACCGTAGGTGGATACATCTCCCC 1357687 Query 9474 GTCAATCATCTG 9485 || ||||||||| Sbjct 1357688 GTTAATCATCTG 1357699 Score = 102 bits (112), Expect = 1e-16 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 || || || || ||||||||||||||| | || ||||||||| ||| ||| ||| ||| Sbjct 1354535 CCACCAAATGTACTGGGCTTCCAGTACTCAGGAGAGCAGATGGGATTCCCCAAGAGCCCT 1354594 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494 || | |||||| || ||||| | || | ||||| || || || ||||| ||||| | Sbjct 1354595 TTCAAGGAGAAGGGGGCCCCAATTTCCACCATGCTTTCTCCAAAAATGGCATTGGGCTGC 1354654 Query 8495 GGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCC 8554 ||| ||||||| || || | ||| | |||| || || | ||||||||| | | Sbjct 1354655 CTCTTCTCCACCAGCAAGCCAGGGTAGAATTCCATGGCATCAATGTCTCCGTACACCTCT 1354714 Query 8555 CTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || || || || ||||||| || |||| Sbjct 1354715 TCCAGCTCAGCTGCCATCTCCTCCTCCCCTG 1354745 >seq15190 Length=331036 Score = 136 bits (150), Expect = 6e-27 Identities = 159/212 (75%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 || ||||| || || ||||||||||| | || ||||||||| | || ||||||||||| Sbjct 86243 CCCCCGAAAGTACTTGGCTTCCAGTATTCAGGCGAGCAGATGGCATTACCCATGAGGCCT 86302 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494 || | ||| || || ||||| | || | ||| ||||||| |||||||| || || Sbjct 86303 TTCAAGGAAAATGGTGCCCCAAGTTCTATCATGGTCTCACCAAAGATGGCACCTGGGCGT 86362 Query 8495 GGCTTTTCCACCAAGAA-TCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGC 8553 ||||||| || |||||| | | | ||||||||||| || || | |||||| ||||| | Sbjct 86363 GGCTTTT-CAACAAGAAGTGCTGGGTACAGCTCCATCGCATCAATGTCTCCATAAAGCTC 86421 Query 8554 CCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 ||||| ||||| || || |||||||||| Sbjct 86422 TTCAAGTTCTGCAGCCATTTCTTTTTCTCCTG 86453 Score = 129 bits (142), Expect = 8e-25 Identities = 179/251 (71%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 || || | ||| || | || || |||||||| ||||| || |||||||||||| || Sbjct 88308 CCTATCAGGATCAGCCTGGTAGTTTGGAACAGCTGCTCATCGTCCCATTCTGGATGCTCC 88367 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 | ||| || ||||| || |||| ||||||||||| |||||| | || || |||||||| Sbjct 88368 TTTTTAAGTACATCACAGACCCGGTTGTGTTCCCGGAGCCATAAGGTAGCATACATCATC 88427 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACT 9414 || || || |||| ||||| |||| || || |||| | ||| || || || || Sbjct 88428 AGTCCTGGAACCAAACCAAAGACCTCCTGTCCTACAGAAAACTGCAGGTGCTCAGGGACG 88487 Query 9415 TCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCG 9474 | ||| ||||| ||||| | ||||| ||||| || | || || ||||| || || Sbjct 88488 TTGGGTGGATATATCATCTCTGCCTGGGTTTCTTTCACAGTAGGTGGGTACATCTCTCCA 88547 Query 9475 TCAATCATCTG 9485 | |||| ||| Sbjct 88548 CCGATCACCTG 88558 Score = 86.0 bits (94), Expect = 9e-12 Identities = 116/159 (73%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGG-GCCTCGCGCCAAATCAGTCCTAA 9707 |||||||||||| || || |||| ||||||||||| ||| | | ||| ||| | | Sbjct 90588 TCTTACCCCATGGCCAAGGGCTTTTGTGAAGGCCGGCCCCTTGTG-GTGATCCGTCTTGA 90646 Query 9708 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 9767 || ||||||| |||||||| ||| |||| || | ||||| | ||| ||||| || || | Sbjct 90647 AATACTGGTGGGTGAAATGCTGGGCAAAGAACGTGAACATAATGTTTGTGCCTTGAGGGT 90706 Query 9768 CGGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 9806 ||||| | || | |||| || ||| || || |||| Sbjct 90707 CGGGAATAAATTTTCTCCTCAGCAGAAACTTATCGACAA 90745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715160776160000