Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq14676 111 2e-19 seq12452 96.9 4e-15 seq16337 82.4 9e-11 >seq14676 Length=200364 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| || || | ||| || ||||| |||||||| ||||||| || | ||| | Sbjct 115173 CCTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAACCCTCTCTTCT 115114 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | |||||| ||||| ||||| || ||||| |||||||||||||| ||||| ||||| | Sbjct 115113 TCAACCAAAAGATGGATGCAAAGGAGCCAGAGAAGAAAATTCCTTCCACTGCTGCAAAAG 115054 Query 24277 C 24277 | Sbjct 115053 C 115053 >seq12452 Length=479537 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| |||| ||||| | || ||||| || || ||||| ||||| || || | ||| | Sbjct 148884 CCTCATCTCGGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATCAGACCCCTCTTCT 148943 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||||||||| | ||||| || || || ||||| || ||||| ||||| ||||||| Sbjct 148944 TCAGCCAAAATATAGCAGCAAAAGAACCTGAGAAGAAGATCCCTTCCACTGCAGCAAAGG 149003 Query 24277 CAATAAGTCTTTCTCC 24292 ||| | ||| || || Sbjct 149004 CAACCACTCTCTCCCC 149019 Score = 82.4 bits (90), Expect = 9e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 24632 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 24691 ||| ||||| ||||||| || || || | ||||||||||||||| ||||| || || | Sbjct 161136 CACCTCTTCTGCTGTCCAGAAGGAAGCTTGTGCCTTTTTATACATGTTCCATATATCCGG 161195 Query 24692 ATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTT 24731 ||||| | ||| || || ||||||||| ||||||||| Sbjct 161196 GTATTGGAGTGGGAAGATGACAAATCTACGAGGATTTTTT 161235 >seq16337 Length=344012 Score = 82.4 bits (90), Expect = 9e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 53384 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 53443 ||| | || || |||||||| || | || | || |||||||| || | || || ||| Sbjct 237058 CCTTCGTAAGTTTCGTATGGGCCATGCTCTTTGGCGAGTTCACAGCTGGATTCCAAAGCA 237117 Query 53444 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 53503 || ||||||||||| |||||||||| || || | || || || |||| ||||| Sbjct 237118 CCATAATAAATGGTCTCGAAGATCTGCTGGTTCAACAACTGGGCCTCGGGGCTTTCAAAG 237177 Query 53504 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 53563 || || | | || || ||||| || || | || || || ||||| || || || | | Sbjct 237178 GGGTATCTCATCAGGATGAACGCATCCGCCAGACCCTGCACTCCAATGCCAATGGGACGA 237237 Query 53564 TGTCTCTTATTAGAGATTTCAGC 53586 || | || || |||| ||||| Sbjct 237238 TGGCGTTTGTTGGAGAGCTCAGC 237260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593560671760320