Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq15322 105 8e-18 seq12430 102 1e-16 >seq15322 Length=929654 Score = 105 bits (116), Expect = 8e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 ||||| |||| ||||| | ||| || || ||||| || |||||||| || ||||| ||| Sbjct 719394 AGGCCTGTGACATGGGCAATCATATATGTGAGCAGTGAATAGCTGGCGATATTGAAAGGC 719453 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 |||||||| |||||||| || || | ||| |||| |||||| || || || || Sbjct 719454 ACCCCCAGTCCCATGTCTCCAGATCTCTGATACAACTGGCAAGACAGTTCACCATTTAGA 719513 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 || || ||||||||||| ||||| || |||| ||||| Sbjct 719514 ACATAAAACTGGCACAGAGCATGGCAAGGAGGCAAAGCCAT 719554 >seq12430 Length=2256680 Score = 102 bits (112), Expect = 1e-16 Identities = 216/319 (68%), Gaps = 10/319 (3%) Strand=Plus/Minus Query 176385 TTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAA 176444 ||||| || |||||||| | | || ||| | || | |||| ||||| |||| | | | Sbjct 603707 TTTGGCCTGGTGGGCAATGTGCTCGTTGTGCTGATCCTGATAAAATACAAGAAGCTGAGA 603648 Query 176445 AACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACT 176504 | | | ||| |||| | ||| | || ||||||| ||||| ||||| ||| |||| | Sbjct 603647 AGCATGACTGACATCTATCTGCTGAATCTGGCAATTTCTGATTTGCTTTTTATTTTTTCC 603588 Query 176505 TTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTG 176564 ||||||||||| |||| || | | | ||| ||| |||||| | | | || Sbjct 603587 CTGCCATTTTGGGCTTACTACATAGCA------CGTGAGTGGGATTTTGGAAATGCAATG 603534 Query 176565 TGTAAACTGC--TCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCA 176622 |||||| | | |||||||| | | || | || | | ||||| | |||| ||| | Sbjct 603533 TGTAAAATTCTTTCAGGGGTCTATTTTGC-TGGC-TTCTACAGTGGAATGTTTTTCATAA 603476 Query 176623 TCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTA 176682 | || | ||| |||| || ||||| || ||||| |||| || |||||| | || Sbjct 603475 TACTTTTGACAATAGATAGATATCTGGCCATTGTCCATGCAGTGTTTGCTTTAAAAGCTA 603416 Query 176683 GAACAGTAACCTGTGGCAT 176701 | ||||| |||| |||||| Sbjct 603415 GGACAGTTACCTATGGCAT 603397 Score = 102 bits (112), Expect = 1e-16 Identities = 216/319 (68%), Gaps = 10/319 (3%) Strand=Plus/Minus Query 9499 TTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAA 9558 ||||| || |||||||| | | || ||| | || | |||| ||||| |||| | | | Sbjct 603707 TTTGGCCTGGTGGGCAATGTGCTCGTTGTGCTGATCCTGATAAAATACAAGAAGCTGAGA 603648 Query 9559 AACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACT 9618 | | | ||| |||| | ||| | || ||||||| ||||| ||||| ||| |||| | Sbjct 603647 AGCATGACTGACATCTATCTGCTGAATCTGGCAATTTCTGATTTGCTTTTTATTTTTTCC 603588 Query 9619 TTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTG 9678 ||||||||||| |||| || | | | ||| ||| |||||| | | | || Sbjct 603587 CTGCCATTTTGGGCTTACTACATAGCA------CGTGAGTGGGATTTTGGAAATGCAATG 603534 Query 9679 TGTAAACTGC--TCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCA 9736 |||||| | | |||||||| | | || | || | | ||||| | |||| ||| | Sbjct 603533 TGTAAAATTCTTTCAGGGGTCTATTTTGC-TGGC-TTCTACAGTGGAATGTTTTTCATAA 603476 Query 9737 TCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTA 9796 | || | ||| |||| || ||||| || ||||| |||| || |||||| | || Sbjct 603475 TACTTTTGACAATAGATAGATATCTGGCCATTGTCCATGCAGTGTTTGCTTTAAAAGCTA 603416 Query 9797 GAACAGTAACCTGTGGCAT 9815 | ||||| |||| |||||| Sbjct 603415 GGACAGTTACCTATGGCAT 603397 Score = 89.7 bits (98), Expect = 6e-13 Identities = 234/351 (67%), Gaps = 12/351 (3%) Strand=Plus/Plus Query 9499 TTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAA 9558 ||||| || |||| ||| |||| ||| | || | |||| ||||| |||| | | | Sbjct 838927 TTTGGCCTGGTGGGAAATGCGCTAGTTGTGCTGATCCTGATAAAATACAAGAAGCTGAGA 838986 Query 9559 AACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACT 9618 | | | ||| |||| | ||| | || ||||||| || || ||||| ||| || | | Sbjct 838987 AGCATGACTGACATCTATCTGCTGAATCTGGCAATTTCCGATTTGCTTTTTATTCTTTCC 839046 Query 9619 TTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTG 9678 ||||||||||| |||| | | | ||||| ||| |||||| | | | || Sbjct 839047 CTGCCATTTTGGGCTTACTACGTAGCA------CATGAATGGGATTTTGGAAATGCAATG 839100 Query 9679 TGTAAACTGC--TCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCA 9736 |||||| | | |||||||| | | | | || | | || || | |||| ||| | Sbjct 839101 TGTAAAATTCTTTCAGGGGTCTATTATGC-TGGC-TTCTATAGTGGAATGTTTTTCATAA 839158 Query 9737 TCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTA 9796 | || | ||| ||||||| ||||| || ||||| |||| || |||||| | | || Sbjct 839159 TACTTTTGACAATAGACAGATATCTGGCCATTGTCCATGCAGTGTTTGCTTTAAAGGCTA 839218 Query 9797 GAACAGTAACCTGTGGCATAGTTACCTGTGTATGT-ACCTGGTTTCTGGCA 9846 | ||||| |||| |||||| | || |||| ||| || ||| || | ||| Sbjct 839219 GGACAGTTACCTATGGCATCCTCACAAGTGT-TGTCACTTGGGTTGTTGCA 839268 Score = 89.7 bits (98), Expect = 6e-13 Identities = 234/351 (67%), Gaps = 12/351 (3%) Strand=Plus/Plus Query 176385 TTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAA 176444 ||||| || |||| ||| |||| ||| | || | |||| ||||| |||| | | | Sbjct 838927 TTTGGCCTGGTGGGAAATGCGCTAGTTGTGCTGATCCTGATAAAATACAAGAAGCTGAGA 838986 Query 176445 AACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACT 176504 | | | ||| |||| | ||| | || ||||||| || || ||||| ||| || | | Sbjct 838987 AGCATGACTGACATCTATCTGCTGAATCTGGCAATTTCCGATTTGCTTTTTATTCTTTCC 839046 Query 176505 TTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTG 176564 ||||||||||| |||| | | | ||||| ||| |||||| | | | || Sbjct 839047 CTGCCATTTTGGGCTTACTACGTAGCA------CATGAATGGGATTTTGGAAATGCAATG 839100 Query 176565 TGTAAACTGC--TCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCA 176622 |||||| | | |||||||| | | | | || | | || || | |||| ||| | Sbjct 839101 TGTAAAATTCTTTCAGGGGTCTATTATGC-TGGC-TTCTATAGTGGAATGTTTTTCATAA 839158 Query 176623 TCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTA 176682 | || | ||| ||||||| ||||| || ||||| |||| || |||||| | | || Sbjct 839159 TACTTTTGACAATAGACAGATATCTGGCCATTGTCCATGCAGTGTTTGCTTTAAAGGCTA 839218 Query 176683 GAACAGTAACCTGTGGCATAGTTACCTGTGTATGT-ACCTGGTTTCTGGCA 176732 | ||||| |||| |||||| | || |||| ||| || ||| || | ||| Sbjct 839219 GGACAGTTACCTATGGCATCCTCACAAGTGT-TGTCACTTGGGTTGTTGCA 839268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589916859683360