Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq6886 123 3e-23 seq13172 89.7 6e-13 >seq6886 Length=255382 Score = 123 bits (136), Expect = 3e-23 Identities = 217/310 (70%), Gaps = 12/310 (4%) Strand=Plus/Plus Query 83056 GAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCG 83115 ||| ||| || |||||||||||| | ||| | ||||||| | | ||||||| | Sbjct 136740 GAGGAGGCGCTGGATGTCGGGCTCGATGGCAATGGTCTGGAACTTGGGGCTGTAGCGTTT 136799 Query 83116 CACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCG 83175 | |||| || || | ||||||| |||||||||||||||||||| | ||||| ||| Sbjct 136800 GAAGGGCTCCCCCTCGGGCCCCACCAGGAACTTCTCGAAGTTCCAGGAGAGGTCGTCGCG 136859 Query 83176 GCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCA-CGAGCGTGCTCATG--TCGTC 83232 || ||| || ||| | | || || |||||||| || | || || | | ||||| Sbjct 136860 GCGCACGGGGCTCCACACGACGAACTTGGGGTCGCCCATCAAG---GCGGAGGGCTCGTC 136916 Query 83233 GCTAGGCGCCGGCA---GGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACC 83289 | || | |||| |||||| || ||| ||||||||| || || | || || Sbjct 136917 GGCCGGGGTGGGCAGGTGGGCCT-TC--AGGTAGGCGAAGACGGGGTGCACATCTGGCCC 136973 Query 83290 GTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGAC 83349 || |||| ||| |||| |||||| | ||||| |||||||||||| ||| || || || Sbjct 136974 ATTCACCTGGCATTTCTGGAAGAGGGTGAAGTTGGGCTCGAAGCCGGCCCCGGGCCGCAC 137033 Query 83350 GTGCTTCAGG 83359 || |||||| Sbjct 137034 GTATTTCAGG 137043 Score = 105 bits (116), Expect = 8e-18 Identities = 116/153 (76%), Gaps = 5/153 (3%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGC-TCCTAGG 83449 |||||| || |||||||| || ||||| || ||||| ||||||| ||| | | | || Sbjct 138555 CCTGGTAGCCAAACTGGTTGCAAGGGAAGCCCAGCACGACCAGCCGCCGTGGGTACCGGG 138614 Query 83450 CGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCT 83509 | |||||||| ||| | ||| ||||| ||||| ||||| | ||||||||||| || Sbjct 138615 C----CTGCAGCTGGTTGAGCTGGGTGTAATCCCGCACCGTCGTGCCTCAGAGGGATGCC 138670 Query 83510 ACGTTCTCGATGAGCAAGACCCGGCCCCGTAAG 83542 |||||||| || | | ||||||||||| ||| Sbjct 138671 ACGTTCTCAATCAAAACCACCCGGCCCCGGAAG 138703 >seq13172 Length=436600 Score = 89.7 bits (98), Expect = 6e-13 Identities = 111/147 (76%), Gaps = 5/147 (3%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 ||||||| ||||||||||| || ||||| | ||||| |||| || | | | || || Sbjct 154532 CCTGGTGGCCGAACTGGTTGCAGGGGAAGGCCAGCACGGCCAG--CCTGGACCCATA-GC 154588 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 ||| |||||||||| | | ||| | | | |||||| ||||| | |||||||| ||||| | Sbjct 154589 GCCTCTGCAGCTCGCTGAGCTGGGCGAAGTCCCGGGCCGTGGTGCCTCAGAGCGACGCCA 154648 Query 83511 CGTT-CTCGATGAGCAAGACCCGGCCC 83536 |||| ||| | |||| || |||||| Sbjct 154649 CGTTGCTC-ACCAGCAGTACGCGGCCC 154674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608631785627360