Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq10790 95.1 2e-14 >seq10790 Length=1503029 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || | || |||||||| || || ||||| | || | | Sbjct 360664 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAGGTAGAGCCCAGC 360723 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || ||||| ||||| |||||||| || || || || || Sbjct 360724 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 360783 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| ||||| || | || ||| | || || | || || || Sbjct 360784 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 360843 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| ||| |||| ||||| | || | ||||||||||| Sbjct 360844 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGGTAT 360893 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || | || |||||||| || || |||| | || | | Sbjct 361798 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGC 361857 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || ||||| ||||| |||||||| || || || || || Sbjct 361858 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 361917 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| ||||| || | || ||| | || || | || || || Sbjct 361918 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 361977 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| ||| |||| ||||| | || | ||||||||||| Sbjct 361978 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGGTAT 362027 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || | || |||||||| || || |||| | || | | Sbjct 362026 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGC 362085 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || ||||| ||||| |||||||| || || || || || Sbjct 362086 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 362145 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| ||||| || | || ||| | || || | || || || Sbjct 362146 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 362205 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| ||| |||| ||||| | || | ||||||||||| Sbjct 362206 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGGTAT 362255 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/230 (69%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || | || |||||||| || || ||||| | || | | Sbjct 360437 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAGGTAGAGCCCAGC 360496 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || ||||| || || |||||||| || || || || || Sbjct 360497 GACACCATTGAGAATGTCAAGGCCAAAATCCA-GACAAAGAAGGCATTCCTCCAGACCAG 360555 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| ||||| || | || ||| | || || | || || || Sbjct 360556 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 360615 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| ||| |||| ||||| | || | ||||||||||| Sbjct 360616 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGGTAT 360665 Score = 87.8 bits (96), Expect = 3e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || | || |||||||| || || ||||| | || | | Sbjct 362254 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAG-TAGAGCCCAGC 362312 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || ||||| ||||| |||||||| || || || || || Sbjct 362313 GACACCATTGAGAATGTCAAGGC-AAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 362371 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| ||||| || | || ||| | || || | || || || Sbjct 362372 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 362431 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| ||| |||| ||||| | || | ||||||||||| Sbjct 362432 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGGTAT 362481 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||| ||||| |||||||| || || || || || || ||||| || ||||| ||||| Sbjct 360070 AAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAGCAGAGGCTGATCTTTGCCGGAAAG 360129 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | || ||| | || || | || || || || || |||||||| ||| |||| Sbjct 360130 CAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACATCCAGAAAGAATCCACTCTGCAC 360189 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| | || | ||||||||||| Sbjct 360190 TTGGTCCTGCGCCTCCGAGGTGGTAT 360215 Score = 84.2 bits (92), Expect = 3e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || | || |||||||| || || |||| | || | | Sbjct 360892 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGC 360951 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || ||||| ||||| |||||||| || || || || || Sbjct 360952 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 361011 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| |||| || ||||| ||||| || | || ||| | || || | || || || Sbjct 361012 CAA-GGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 361070 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| ||| |||| ||||| | || | ||||||||||| Sbjct 361071 AT-CAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGGTAT 361119 Score = 84.2 bits (92), Expect = 3e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || | || |||||||| || || ||||| | || | | Sbjct 361345 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAG-TAGAGCCCAGC 361403 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || ||||| || || |||||||| || || || || || Sbjct 361404 GACACCATTGAGAATGTCAAGGCCAAAATCCA-GACAAAGAAGGCATTCCTCCAGACCAG 361462 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| ||||| || | || ||| | || || | || || || Sbjct 361463 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 361522 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| ||| |||| ||||| | || | ||||||||||| Sbjct 361523 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGGTAT 361572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755251233651200