Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_002229.3 Length=177874 Score E Sequences producing significant alignments: (Bits) Value seq3533 132 5e-26 seq3529 116 4e-21 >seq3533 Length=21420 Score = 132 bits (146), Expect = 5e-26 Identities = 149/194 (77%), Gaps = 9/194 (5%) Strand=Plus/Plus Query 139501 GCGCGTGTGGGAGCGACGCCGTCCGCGCGCCCCACGGCGCAggggggcgcgggggttgcc 139560 ||| || || ||||| | ||| ||||| ||||||| || |||||| | |||| |||| Sbjct 267 GCGTGTCTGAGAGCGGCCCCGACCGCGGGCCCCACAGCTCAGGGGAGGGCGG---TTGCG 323 Query 139561 ccgggggcgccgctcccgtgttgctctgctggggg---cgcg-gggccgcgcgcCGCATC 139616 | |||| |||| ||| ||| ||||||| | || | ||| ||| | ||| | | | Sbjct 324 CAGGGGCCGCCACTCACGT-TTGCTCTCCCGGCCGACCCGCCCGGGACCCGCCCTTCCAC 382 Query 139617 TCCCGGGCGCCGCCGAGGCTGACAGAGGCGAACTCTTCGCGGCGGCAATGGCGGGTGCCG 139676 ||||| |||| ||||||||||||||| ||||||||||||||| ||| ||||| | |||| Sbjct 383 -CCCGGCCGCCCCCGAGGCTGACAGAGACGAACTCTTCGCGGCAGCAGTGGCGCGAGCCG 441 Query 139677 GCCGACCGCGGCCT 139690 || ||||||||||| Sbjct 442 GCTGACCGCGGCCT 455 Score = 132 bits (146), Expect = 5e-26 Identities = 149/194 (77%), Gaps = 9/194 (5%) Strand=Plus/Minus Query 1930 AGGCCGCGGTCGGCCGGCACCCGCCATTGCCGCCGCGAAGAGTTCGCCTCTGTCAGCCTC 1989 ||||||||||| |||||| | ||||| ||| ||||||||||||||| ||||||||||||| Sbjct 455 AGGCCGCGGTCAGCCGGCTCGCGCCACTGCTGCCGCGAAGAGTTCGTCTCTGTCAGCCTC 396 Query 1990 GGCGGCGCCCGGGAGATGCGgcgcgcggccc-cgcg---cccccagcagagcaacacggg 2045 || |||| ||||| | | | ||| | ||| ||| | || | ||||||| ||| | Sbjct 395 GGGGGCGGCCGGG-GTGGAAGGGCGGGTCCCGGGCGGGTCGGCCGGGAGAGCAA-ACGTG 338 Query 2046 agcggcgcccccggggcaacccccgcgccccccTGCGCCGTGGGGCGCGCGGACGGCGTC 2105 || |||| |||| | |||| |||| | |||||| || ||||||| ||||| ||| | | Sbjct 337 AGTGGCGGCCCCTGCGCAA---CCGCCCTCCCCTGAGCTGTGGGGCCCGCGGTCGGGGCC 281 Query 2106 GCTCCCACACGCGC 2119 |||| || || ||| Sbjct 280 GCTCTCAGACACGC 267 >seq3529 Length=265555 Score = 116 bits (128), Expect = 4e-21 Identities = 144/192 (75%), Gaps = 9/192 (5%) Strand=Plus/Plus Query 1930 AGGCCGCGGTCGGCCGGCACCCGCCATTGCCGCCGCGAAGAGTTCGCCTCTGTCAGCCTC 1989 ||||||||||| |||||| | ||||| ||| ||||||||||||||| ||||||||||||| Sbjct 18238 AGGCCGCGGTCAGCCGGCTCGCGCCACTGCTGCCGCGAAGAGTTCGTCTCTGTCAGCCTC 18297 Query 1990 GGCGGCGCCCGGGAG--ATGCGgcgcgcggccccgcgcccccagcagagcaacacgggag 2047 || | ||| ||| | | |||| | ||| | | | || | ||||||| ||| ||| Sbjct 18298 GGGGCGGCCGGGGTGGAAGGCGGGTCCCGG-GCGGGTCGGCCGGGAGAGCAA-ACGTGAG 18355 Query 2048 cggcgcccccggggcaacccccgcgccccccTGCGCCGTGGGGCGCGCGGACGGCGTCGC 2107 |||| ||| | |||||| | || ||||| || ||||||| ||||| ||| | ||| Sbjct 18356 TGGCG-GCCCTGCGCAACCGC----CCTCCCTGAGCTGTGGGGCCCGCGGTCGGGGCCGC 18410 Query 2108 TCCCACACGCGC 2119 || || || ||| Sbjct 18411 TCTCAGACACGC 18422 Score = 116 bits (128), Expect = 4e-21 Identities = 144/192 (75%), Gaps = 9/192 (5%) Strand=Plus/Minus Query 139501 GCGCGTGTGGGAGCGACGCCGTCCGCGCGCCCCACGGCGCAggggggcgcgggggttgcc 139560 ||| || || ||||| | ||| ||||| ||||||| || ||||| || | |||||| Sbjct 18422 GCGTGTCTGAGAGCGGCCCCGACCGCGGGCCCCACAGCTCAGGGAGG----GCGGTTGCG 18367 Query 139561 ccgggggcgccgctcccgtgttgctctgctgggggcgcggggccgcgcgcCGCAT--CTC 139618 | ||| |||| ||| ||| ||||||| | || | | | ||| | |||| | | | Sbjct 18366 CAGGGC-CGCCACTCACGT-TTGCTCTCCCGGCCGACCCGC-CCGGGACCCGCCTTCCAC 18310 Query 139619 CCGGGCGCCGCCGAGGCTGACAGAGGCGAACTCTTCGCGGCGGCAATGGCGGGTGCCGGC 139678 || ||| | ||||||||||||||| ||||||||||||||| ||| ||||| | |||||| Sbjct 18309 CCCGGCCGCCCCGAGGCTGACAGAGACGAACTCTTCGCGGCAGCAGTGGCGCGAGCCGGC 18250 Query 139679 CGACCGCGGCCT 139690 ||||||||||| Sbjct 18249 TGACCGCGGCCT 18238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568914553901760