Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_002641.1 Length=159160 Score E Sequences producing significant alignments: (Bits) Value seq10818 145 8e-30 >seq10818 Length=725993 Score = 145 bits (160), Expect = 8e-30 Identities = 282/417 (68%), Gaps = 9/417 (2%) Strand=Plus/Minus Query 125104 CTTACCCATCCGCCGTGCTCCCGCAACCACTCGCCCTGCTCTTCGGCCAGGTACGCGGCC 125163 |||||||| ||||||||| || || |||||||| || ||| ||||||||||| | |||| Sbjct 453539 CTTACCCAGCCGCCGTGCGCCTCCAGCCACTCGCGCTTCTCCTCGGCCAGGTAGGAGGCC 453480 Query 125164 AGCGCTGCGGCCAAGCGGCTTGGCCCTTCCTCACAGCCGTTTTCGTACAGCGCCGTTGCC 125223 ||| | |||||||||||| | | | ||| | ||| | ||| |||||||| ||| Sbjct 453479 AGCACCTCGGCCAAGCGGCCCGCCTCCTCCCGGCTGCCCTGCTCGGCCAGCGCCGCCGCC 453420 Query 125224 AGCGAGCCGCCGAGGACTATGGTCGCCAGGCATCGACCCCAGTTGAAGCCGCTTCCGGAG 125283 || || ||| || | |||||| ||| |||||||| | ||||| | | Sbjct 453419 AGGCTCCCCGCGAACACCACCAGCGCCAGCACTCGGCCCCAGTTCAGGCCGCCCTCCGCC 453360 Query 125284 TTCA---ATTCAGACACCACACTTTGCAGCGCCGACAACGCTGCCTGCGTGCCGCCGCTC 125340 | || || | |||| || ||||||||| | ||| || ||| || | Sbjct 453359 TCCAGCTGCTCCGCCACCCGGCTCAGCAGCGCCGCC--GGCTCCCGGCG-CTCGTCCAGG 453303 Query 125341 GCTAACGGCGCGCAGGAGCGAAAGAAGGGCCTCTCTCGCCGCTCCAGCTCGGCCGCCGCT 125400 || | ||| ||||| ||| |||||||||| ||| || | |||||||||| ||||| Sbjct 453302 GCCAGCGGGCGGCAGGCGCGGAAGAAGGGCCGCTCCCGGCTCTCCAGCTCGCTGGCCGCC 453243 Query 125401 CGCCGNNNNNNNNNNNNNGTAGGACTCGGCGGCGGCCCTTCCTTGCCGC---AGCAGTGC 125457 ||||| | || || ||||||||| || ||| | || |||| Sbjct 453242 CGCCGCAGCGTCTCAGCCGCGGGGCTGGGCGGCGGCAGCGCCGGGCCCCCCAGGCGGTGC 453183 Query 125458 TGGAAGTAATCCTCCAGCAGCAACGCCGTTTCTTCCTTCAGGGAGTCAGCCATGGCT 125514 ||||||||||| ||||||||| |||||| | |||||||| ||| | | ||||||| Sbjct 453182 TGGAAGTAATCGCCCAGCAGCAGCGCCGTCTGCTCCTTCAGCGAGCCCGGCATGGCT 453126 Score = 140 bits (154), Expect = 3e-28 Identities = 283/418 (68%), Gaps = 11/418 (3%) Strand=Plus/Plus Query 157082 AGCCATGGCTGACTCCCTGAAGGAAGAAACGGCGTTGCTGCTGGAGGATTACTTCCAGCA 157141 ||||||| | | ||| |||||||| | |||||| ||||||||| |||||||||||||| Sbjct 453126 AGCCATGCCGGGCTCGCTGAAGGAGCAGACGGCGCTGCTGCTGGGCGATTACTTCCAGCA 453185 Query 157142 CTGCT---GCGGCAAGGAAGGGCCGCCGCCGAGTCCTACGGCGGCAGA-GCTGCGGCGAG 157197 | || | ||| || ||||||||| || || |||| | ||| ||||||||| | Sbjct 453186 CCGCCTGGGGGGCCCGGCGCTGCCGCCGCCCAGCCCCGCGGCTG-AGACGCTGCGGCGGG 453244 Query 157198 CNNNNNNNNNNNNNGAGCGGCGAGAGAGGCCCTTCTTTCGCTCCTGCGCGCCGTTAGCGA 157257 | ||| | || ||| |||||||||| ||| ||||| ||| | || Sbjct 453245 CGGCCAGCGAGCTGGAGAGCCGGGAGCGGCCCTTCTTCCGCGCCTGCCGCCCGCTGGCCC 453304 Query 157258 GCGGCGGCACGCAGGCAGCGTTGTCGGCGCTGCAAAGTGTGGTGTCTGAAT---TGAACT 157314 | || ||| || ||| | ||||||||| || |||| | || || | Sbjct 453305 TGGACGAG-CGCCGGGAGCC--GGCGGCGCTGCTGAGCCGGGTGGCGGAGCAGCTGGAGG 453361 Query 157315 CCGGAAGCGGCTTCAACTGGGGTCGATGCCTGGCGACCATAGTCCTCGGCGGCTCGCTGG 157374 | | ||||| | |||||||| ||| |||||| | || ||| || |||| Sbjct 453362 CGGAGGGCGGCCTGAACTGGGGCCGAGTGCTGGCGCTGGTGGTGTTCGCGGGGAGCCTGG 453421 Query 157375 CAACGGCGCTGTACGAAAACGGCTGTGAGGAAGGGCCAAGCCGCTTGGCCGCAGCGCTGG 157434 | |||||||| ||| | ||| | ||| | | | |||||||||||| | ||||| Sbjct 453422 CGGCGGCGCTGGCCGAGCAGGGCAGCCGGGAGGAGGCGGGCCGCTTGGCCGAGGTGCTGG 453481 Query 157435 CCGCGTACCTGGCCGAAGAGCAGGGCGAGTGGTTGCGGGAGCACGGCGGATGGGTAAG 157492 || | ||||||||||| ||| || |||||||| || || ||||||||| |||||||| Sbjct 453482 CCTCCTACCTGGCCGAGGAGAAGCGCGAGTGGCTGGAGGCGCACGGCGGCTGGGTAAG 453539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509045985676800