Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq12452 105 6e-18 seq14676 86.0 6e-12 >seq12452 Length=479537 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 15886 TTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTT 15945 ||| ||||| ||| || | || ||||| ||| || | | || |||||||| | Sbjct 134105 TTAGAAATCTGCATCCAGTGTGAAAACATTGTCTGTTGTTTCTGCCATAACTGCAAAGCG 134164 Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 ||||| || ||| | ||| ||||||||||||||||||||||| | ||||||||| || Sbjct 134165 CTGATACTCTGAAACCCGCTTCTCAAAGAAATTTGTTTTTCCTTCCAGTGAAATATTCTC 134224 Query 16006 CATAAAATCAAAAGGATTTTTTG 16028 ||| |||||||||||||||| || Sbjct 134225 CATGAAATCAAAAGGATTTTCTG 134247 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 16268 CTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAAT 16327 || || | ||| || || ||||| || || ||||| || || | || || | ||||||| Sbjct 148895 CTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATCAGACCCCTCTTCTTCAGCCAAAAT 148954 Query 16328 ATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGC 16387 ||||| ||||| ||||| || ||||| || ||||| ||||| ||||| ||||||| || | Sbjct 148955 ATAGCAGCAAAAGAACCTGAGAAGAAGATCCCTTCCACTGCAGCAAAGGCAACCACTCTC 149014 Query 16388 TCACC 16392 || || Sbjct 149015 TCCCC 149019 >seq14676 Length=200364 Score = 86.0 bits (94), Expect = 6e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 16498 ATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGC 16557 |||| ||| ||||||||||| || | ||| |||||||||||||| || || ||||| || Sbjct 111813 ATCTTTAATGTAAGTATCTATGAGCAGACTGTACATTTCTGAATGTATGTTTTCCATAGC 111754 Query 16558 TATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 ||||| || ||||| || || | ||||| | || |||||||| Sbjct 111753 AATCTGGAAGCCATAGAAACAGCGTGCTTCCGTTACCTGTACTTC 111709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462386636122400