Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq4974 365 3e-96 seq20129 324 1e-83 seq11058 122 6e-23 >seq4974 Length=20907 Score = 365 bits (404), Expect = 3e-96 Identities = 692/1013 (68%), Gaps = 4/1013 (0%) Strand=Plus/Minus Query 107626 ATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGT 107685 ||||| | ||| | || | ||||| | ||| || || | |||| ||| | ||| Sbjct 16218 ATTACGTGAACTTGACTAAGGACTGCACTCACTTTAAAGCGCGCAGGAGGTTTGTTGAGT 16159 Query 107686 TCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGA 107745 ||||||| || ||||| ||| ||| || || ||||| || || ||||| || ||||||| Sbjct 16158 TCCCACTAAGCAAAGAGGAGGAAGATTTTCCTATTGCATATTCCATGGTAGTGCATGAGA 16099 Query 107746 AGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTG 107805 ||||||| | || ||| | || | | || | || | || ||||| |||||||||| Sbjct 16098 AGATTGAGATGTTCGAAAGATTGTTAAGGTCCATCTACACGCCCCAGAATATATACTGTG 16039 Query 107806 TCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCT 107865 ||||||| ||| |||| ||||| || ||||| ||||| ||| | || |||| Sbjct 16038 TCCACGTAGATCTGAAATCCCCGGACGAATTCAAGGAGGCAGTCCGAGGGATCGCCTCCT 15979 Query 107866 GCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCA 107925 ||||| |||||||| |||||| ||| ||| || || || || ||||||||| Sbjct 15978 GCTTCGAAAATGTCTTTGTGGCCACTAAACTGGAGAGAGTAGTGTACGCATCCTGGTCCC 15919 Query 107926 GAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGT 107985 | || ||||| ||||||||||| ||||| || | ||| ||||| ||||| |||| || Sbjct 15918 GGGTCCAAGCGGACCTGAACTGCATGGAGGAGCTACTCAAGAGCAACGTGCCCTGGAGGT 15859 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 | | | || || ||||| || || |||||||| || || || |||||||| |||| Sbjct 15858 ATCTCTTAAACACTTGCGGCACCGATTTCCCCATCAAAACTAACGCCGAGATTGTCCGAA 15799 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaa 108105 |||| ||| | | || || || |||| |||||| |||||| ||| || | ||| Sbjct 15798 CCCTGAAGTTTCTAAATGGGAAAAACAATATGGAATCTGAGAAACCCTCGTCGATCAAGG 15739 Query 108106 aaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGT-ACCCTACCAGCAAGATG 108164 ||||||||| |||| | | | ||| ||| || | || | || | | || | Sbjct 15738 CGGCTCGCTGGAAGTACCACCACCACGTG-GAGA-ACTCGGTGATCCGAACCGCCACGGA 15681 Query 108165 AAGGACCCTCCC-CCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTC 108223 || || |||||| || || | |||||||||||| || ||||||||| |||||| | | Sbjct 15680 AAAGAGCCTCCCGCCCCATGGCTCACCCATGTTCACGGGCAATGCCTATGTTGTGGTCAC 15621 Query 108224 TCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGT 108283 | | |||||| ||| |||| || ||||| | | || ||| | || ||| Sbjct 15620 AAGGGACTTTGTTCAAGCCCTCTTTGAAAACCCGACGGCGCAGCAGCTGCTGGAGTGGTC 15561 Query 108284 CAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGAT 108343 ||||| || || ||||| || ||| | | ||||||||||| || || || | || Sbjct 15560 AAAAGATACTTACAGCCCAGATGAATATATTTGGGCCACCCTCCACCGGATGCCAGGCAT 15501 Query 108344 GCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAG 108403 ||| || || || ||| || |||||| | |||| || | | ||| | || || Sbjct 15500 GCCAGGATCGGTGCCTTATAACGATAAGTATGAGGTCTCTGATGTCAATGCTGTTGCTAG 15441 Query 108404 GCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTG 108463 | || |||||| |||| ||||| |||||||||| ||||| || || | || || Sbjct 15440 ATTGGTGAAGTGGTCCTACCTGGAGGGCGATGTCAGCAAAGGGGCACCCTACCCTCCGTG 15381 Query 108464 CTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCT 108523 | || ||| | ||||| |||| | || |||| || || || ||||||| || Sbjct 15380 TACGGGTGCCCACCAACGGGCCGTCTGTGTGTATGGGGTAGGTGATCTTCACTGGATGCT 15321 Query 108524 CCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCA 108583 ||| |||||||| || | || |||||||||||||| | || ||||| |||| | || Sbjct 15320 CCAAAACCATCATCTGCTAGCCAACAAGTTTGACCCAAATGTAGATGAAAACGCAATCCA 15261 Query 108584 GTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGAG 108636 ||| | || || || |||||| | ||| | | || |||| || || |||| Sbjct 15260 GTGTCTGGAGGAATATCTACGTTACAAGTCAGTGTACGGGAGAGATCTCTGAG 15208 >seq20129 Length=1749028 Score = 324 bits (358), Expect = 1e-83 Identities = 674/988 (68%), Gaps = 12/988 (1%) Strand=Plus/Plus Query 107626 ATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGT 107685 ||||| | ||| | || | ||||| | ||| || || | |||| ||| | ||| Sbjct 885129 ATTACGTGAACTTGACTAAGGACTGCACTCACTTTAAAGCGCGCAGGAGGTTTGTTGAGT 885188 Query 107686 TCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGA 107745 ||| ||| || ||||| ||| ||| || || ||||| || || ||||| || ||||||| Sbjct 885189 TCC-ACTAAGCAAAGAGGAGGAAGATTTTCCTATTGCATATTCCATGGTAGTGCATGAGA 885247 Query 107746 AGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTG 107805 ||||||| | || ||| | || | | || | || | || ||||| |||||||||| Sbjct 885248 AGATTGAGATGTTCGAAAGATTGTTAAGGTCCATCTACACGCCCCAGAATATATACTGTG 885307 Query 107806 TCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCT 107865 ||||||| ||| |||| ||||| || ||||| ||||| ||| | || |||| Sbjct 885308 TCCACGTAGATCTGAAATCCCCGGACGAATTCAAGGAGGCAGTCCGAGGGATCGCCTCCT 885367 Query 107866 GCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCA 107925 |||| | |||||||| |||||| ||| ||| || || || || ||||||||| Sbjct 885368 GCTT-CGAAATGTCTTTGTGGCCACTAAACTGGAGAGAGTAGTGTACGCATCCTGGTCCC 885426 Query 107926 GAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGT 107985 | || ||||| ||||||||||| ||||| || | ||| ||||| ||||| |||| || Sbjct 885427 GGGTCCAAGC-GACCTGAACTGCATGGAGGAGCTACTCAAGAGCAACGTGCC-TGGAGGT 885484 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 | | | || || ||||| || || |||||||| || || || |||||||| |||| | Sbjct 885485 ATCTCTTAAACACTTGCGGCACCGATTTCCCCATCAAAACTAACGCCGAGATTGTCC-GA 885543 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaa 108105 ||| ||| | | || || || |||| |||||| |||||| ||| || | ||| Sbjct 885544 ACCTGAAGTTTCTAAATGGGAA-AACAATATGGAATCTGAGAAACCCTCGTCGATCAAGG 885602 Query 108106 aaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGT-ACCCTACCAGCAAGATG 108164 ||||||||| |||| | | | ||| ||| || | || | || | | || | Sbjct 885603 CGGCTCGCTGGAAGTACCACCACCACGTG-GAGA-ACTCGGTGATCCGAACCGCCACGGA 885660 Query 108165 AAGGACCCTCCC-CCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTC 108223 || || |||||| || || | |||||||||||| || ||||||||| |||||| | | Sbjct 885661 AAAGAGCCTCCCGCCCCATGGCTCACCCATGTTCACGGGCAATGCCTATGTTGTGGTCAC 885720 Query 108224 TCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGT 108283 | | |||||| ||| |||| || ||||| | | || ||| | || ||| Sbjct 885721 AAGGGACTTTGTTCAAGCCCTCTTTGAAAACCCGACGGCGCAGCAGCTGCTGGAGTGGTC 885780 Query 108284 CAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGAT 108343 ||||| || || ||||| || ||| | | ||||||||||| || || || | || Sbjct 885781 AAAAGATACTTACAGCCCAGATGAATATATTTGGGCCACCCTCCACCGGATGCCAGGCAT 885840 Query 108344 GCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAG 108403 ||| || || || ||| || |||||| | |||| || | | ||| | || | Sbjct 885841 GCCAGGATCGGTGCCTTATAACGATAAGTATGAGGTCTCTGATGTCAATGCTGTTGCTA- 885899 Query 108404 GCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTG 108463 | | || |||||| |||| || || |||||||||| ||||| || || | || || Sbjct 885900 GATGGTGAAGTGGTCCTACCTGGA-GGCGATGTCAGCAAAGGGGCACCCTACCCTCCGTG 885958 Query 108464 CTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCT 108523 | || ||| | ||||| |||| | || |||| || || || ||||||| || Sbjct 885959 TACGGGTGCCCACCAACGGGCCGTCTGTGTGTATGGGGTAGGTGATCTTCACTGGATGCT 886018 Query 108524 CCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCA 108583 ||| |||||||| || | || |||||||||||||| | || ||||| |||| | || Sbjct 886019 CCAAAACCATCATCTGCTAGCCAACAAGTTTGACCCAAATGTAGATGAAAACGCAATCCA 886078 Query 108584 GTGCTTAGAAGAGTACCTACGTCATAAG 108611 ||| | || || || |||||| | ||| Sbjct 886079 GTGTCTGGAGGAATATCTACGTTACAAG 886106 >seq11058 Length=1707512 Score = 122 bits (134), Expect = 6e-23 Identities = 570/889 (64%), Gaps = 37/889 (4%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAG-AGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAA 107746 || || |||||||||| |||| || || || |||||||| || || ||||| || | || Sbjct 1686866 CCTCTCAGTAAAGAAGAAGCTGGA-TTTCCAATTGCCTATTCAATAGTGGTATATCACAA 1686808 Query 107747 GATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGT 107806 || || | |||| | || || || | | ||||| |||||||| ||||| | Sbjct 1686807 AATAGACATGCTTGATAGACTTCTAAGATCAATCTATGCTCCTCAGAATTATTACTGCAT 1686748 Query 107807 CCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTG 107866 || || || ||||| ||||| ||||| | || || |||| ||| | ||||| Sbjct 1686747 TCATGTTGACAAAAAGTCTCCAGAAACTTTTCTGGCAGCAGTTAAGGGAATTGTGTCCTG 1686688 Query 107867 CTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAG 107926 ||| |||||||| || ||||| | |||| || || ||||| || ||| ||| Sbjct 1686687 TTTCAATAATGTCTTTATTGCCAGCCAATTGGAGAGTGTAGTGTATGCTTCGTGGAGCAG 1686628 Query 107927 AGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAG 107984 || || || ||||| ||||| ||| |||| | || ||| | ||| | | ||||| Sbjct 1686627 GGTACAGGCAGACCTCAACTGCATGAAAGA-TCTCTACAG-GAGAAGTACAAACTGGAAA 1686570 Query 107985 TACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTG 108044 || || | ||| || || | ||||| || || |||||||| || ||||| | Sbjct 1686569 TATTTGATAAATCTTTGTGGTATGGACTTTCCTATTAAGACCAACCAGGAAATGGTGGAG 1686510 Query 108045 GCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAG---GTACCTTCTGAGTCC 108101 | || | |||||| | ||||| | || ||||| | ||||| || | Sbjct 1686509 AAATTGAAAGCCCTAAAGGGTGAAAACAGCTTAGAAACTGAGAAAATGCCTTC-CAG--C 1686453 Query 108102 aaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAG 108161 ||| ||| || |||||| | | |||||| | | | ||| ||| | || Sbjct 1686452 AAAGAAATACGATGGAAAAAACACTATGAAATTGTTG----ATGGTAAGCTA--AAGAAC 1686399 Query 108162 ATG---------AAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTAT 108212 ||| || | ||||| ||| || | |||| | ||| | || | ||||||| Sbjct 1686398 ATGGGAATAGACAAACAACCTCCACCTCTTAGTATACCTGTTTTCTCTGGCAGTGCCTAT 1686339 Query 108213 TTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAAC-CCTAAATCCCAAAGACT 108271 ||||| || | | ||||| | |||| |||| ||| | |||||| | | | Sbjct 1686338 TTTGTTGCTAGTAGGAGATTTGTAGAGTATGTGCTAGAAAACAGCAAAATCCTTGA-ATT 1686280 Query 108272 GGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCG 108331 ||||||||| |||||||| |||||||| || ||| || | ||||| || |||| | Sbjct 1686279 TATTGAATGGGCTAAAGACACTTATAGCCCTGATGAATACTTGTGGGCTACTATTCAAAG 1686220 Query 108332 TGCTCCGTGGA-TGCCTGGCTCTGT---TCCTAGCCACCCCAAGTATCACATCTCAGACA 108387 ||| || | | || || | || | |||| | ||||||| | | || |||| Sbjct 1686219 -AATCCCTGAAGTCCCAGGGGCAGTTTCTTCTAGTGA---CAAGTATGATGTTTCTGACA 1686164 Query 108388 TGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGG 108447 ||| ||| | ||||| | || |||||||| || || || ||||| | || | Sbjct 1686163 TGAATGCTCTTGCCAGATTTGTGAAGTGGCATTATTTTGAAGGGGATGTTTCAAAAGGTG 1686104 Query 108448 CGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGG 108507 | || ||| | || ||| |||||| ||| | | | | || | | || | || | Sbjct 1686103 CCCCCTATCCTCCGTGCAATGGAATTCATGTGCGCTCTGTGTGTGTGTTTGGTGTGGGAG 1686044 Query 108508 ACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGA 108556 || || ||||||| | ||||| || ||| | || || ||||||||||| Sbjct 1686043 ACTTGAACTGGATGTTACAGAAACACCACTTATTTGCCAACAAGTTTGA 1685995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348176761698216