Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq10790 113 3e-20 seq11386 82.4 6e-11 >seq10790 Length=1503029 Score = 113 bits (124), Expect = 3e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || |||||||| || ||||||||||||| || || | |||| Sbjct 359972 AGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 359913 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| || || || || || || | |||||| || || Sbjct 359912 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCC 359853 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| |||||| | ||| ||||| | |||||| ||| | ||||||| || Sbjct 359852 TGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATGGTT 359793 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||||| ||||| ||||| ||||| || |||||||| Sbjct 359792 TTGCCCGTCAAGGTTTTCACAAAGATCTGCATTTT 359758 Score = 109 bits (120), Expect = 4e-19 Identities = 152/212 (72%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || |||||||| || ||||||||||||| || || | |||| Sbjct 360647 AGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 360588 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| || || || || || || | |||||| || || Sbjct 360587 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCT 360528 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 | | |||| |||||| | ||| ||||| | |||||| || | ||||||| || Sbjct 360527 GGATTTTG-GCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACCTCTAGGGTGATGGTT 360469 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||| ||||| ||||| || ||||| Sbjct 360468 TTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 360437 Score = 109 bits (120), Expect = 4e-19 Identities = 152/212 (72%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || |||||||| || ||||||||||||| || || | |||| Sbjct 361328 AGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 361269 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| || || || || || || | |||||| || || Sbjct 361268 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCT 361209 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||||| |||||| | ||| ||||| | |||||| ||| | ||||||| || Sbjct 361208 TGGATTTG-GCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATGGTT 361150 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||| ||||| ||||| || ||||| Sbjct 361149 TTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 361118 Score = 109 bits (120), Expect = 4e-19 Identities = 164/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 18094 GTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGT 18153 |||| || |||| || | || |||| ||| || || |||||||| || |||||||||| Sbjct 362710 GTTA-CCGCCCCTTAAACGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGT 362652 Query 18154 CGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCA 18213 ||| || || | |||||||| || || || ||| |||| || || || || || Sbjct 362651 CGGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTG 362592 Query 18214 CGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCT 18273 || | |||||| || || |||| |||||| | ||| ||||| | ||||| Sbjct 362591 GAGGAATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCT 362532 Query 18274 CGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | ||| | ||||||| ||||||| ||||| ||||| ||||| || ||||| Sbjct 362531 CTACTTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 362480 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || |||||||| || ||||||||||||| || || | |||| Sbjct 362009 AGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 361950 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| || || || || || || | |||||| || || Sbjct 361949 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCT 361890 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| |||||| | ||| ||||| | |||||| ||| | ||||||| || Sbjct 361889 TGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATGGTT 361830 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||| ||||| ||||| || ||||| Sbjct 361829 TTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 361798 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || |||||||| || ||||||||||||| || || | |||| Sbjct 362237 AGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 362178 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| || || || || || || | |||||| || || Sbjct 362177 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCT 362118 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| |||||| | ||| ||||| | |||||| ||| | ||||||| || Sbjct 362117 TGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATGGTT 362058 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||| ||||| ||||| || ||||| Sbjct 362057 TTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 362026 Score = 105 bits (116), Expect = 5e-18 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || |||||||| || ||||||||||||| || || | |||| Sbjct 361554 AGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 361495 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| || || || || || || | |||||| || || Sbjct 361494 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCT 361435 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 | | |||| |||||| | ||| ||||| | |||||| || | ||||||| || Sbjct 361434 GGATTTTG-GCCTTGACATTCTCAATGGTGTCGCTGGGCTC-TACTCTAGGGTGATGGTT 361377 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||| ||||| ||||| || ||||| Sbjct 361376 TTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 361345 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || |||||||| || ||||||||||||| || || | |||| Sbjct 360875 AGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 360816 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| || || || || || || | |||||| || || Sbjct 360815 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCT 360756 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| |||||| | ||| ||||| | |||||| || | ||||||| || Sbjct 360755 TGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACCTCTAGGGTGATGGTT 360696 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||| ||||| ||||| || ||||| Sbjct 360695 TTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 360664 Score = 100 bits (110), Expect = 2e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || |||||||| ||| |||||||||||| || || | |||| Sbjct 361101 AGGACCAAGTGCAGAGTGGATTCTTTCTGA-TGTTGTAGTCGGACAGGGTGCGCCCATCT 361043 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| || | ||| || || || | |||||| || || Sbjct 361042 TCCAGCTGCTTTCCGGCAAAGATCAG-CCTTGCTGGTCTGGAGGAATGCCTTCTTTGTCT 360984 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| |||||| | ||| ||||| | |||||| ||| | ||||||| || Sbjct 360983 TGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATGGTT 360924 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||| ||||| ||||| || ||||| Sbjct 360923 TTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 360892 Score = 100 bits (110), Expect = 2e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || |||||||| || ||||||||||||| || || | |||| Sbjct 362463 AGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 362404 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| || || || || || || | |||||| || || Sbjct 362403 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCT 362344 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| | |||||| | ||| ||||| | |||||| || | ||||||| || Sbjct 362343 TGGATTT-TGCCTTGACATTCTCAATGGTGTCGCTGGGCTC-TACTCTAGGGTGATGGTT 362286 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||| ||||| ||||| || ||||| Sbjct 362285 TTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 362254 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || |||||||| || ||||||||||||| || || | |||| Sbjct 360197 AGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 360138 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| || || || || || || | |||||| || || Sbjct 360137 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCT 360078 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| |||||| | ||| ||||| | |||||| ||| | ||||||| || Sbjct 360077 TGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTA-GGTGATGGTT 360019 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||| | ||| ||||| || ||||| Sbjct 360018 TTGCCCGTCAA-GGTTTCACAAAGATCTGCAT 359988 Score = 95.1 bits (104), Expect = 9e-15 Identities = 152/212 (72%), Gaps = 5/212 (2%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || |||||||| || ||||||||||||| || | | | |||| Sbjct 360420 AGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACA-GGGTGCGCCATCT 360362 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| || || || || || || | |||||| || || Sbjct 360361 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCT 360302 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 | ||||| |||||| | ||| ||||| | |||||| || | ||||||| || Sbjct 360301 G-GATTTG-GCCTTGACATTCTCAATGGTGTCGCTGGGCTC-TACTCTAGGGTGATGGTT 360245 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||| ||||| ||||| || ||||| Sbjct 360244 TTGCC-GTCAAGGTTTTCACAAAGATCTGCAT 360214 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/215 (70%), Gaps = 7/215 (3%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || |||||||| || ||||||||||||| || || | |||| Sbjct 361781 AGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 361722 Query 18174 TCCAATTGTTTGCCCGCA---TAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTA 18230 |||| || || || ||| |||| || || || || || || | |||||| || Sbjct 361721 TCCAGCTGCTTTCCGGCAAGCAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 361662 Query 18231 TCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATG 18290 || | | |||| |||||| | ||| ||||| | |||||| || | ||||||| Sbjct 361661 TCTGGATTTTG-GCCTTGACATTCTCAATGGTGTCGCTGGGCTC-TACTCTAGGGTGATG 361604 Query 18291 CTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||||| ||||| | ||| ||||| || ||||| Sbjct 361603 GTTTTGCC-GTCAA-GGTTTCACAAAGATCTGCAT 361571 >seq11386 Length=1204925 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | ||| || || || || || || ||||||||||| | | || | |||| Sbjct 432331 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGATAGGGTGCGGCCATCT 432272 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || || | |||||| || || Sbjct 432271 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTCC 432212 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||| | |||||| | ||| |||||||| |||||| || | ||||||| | Sbjct 432211 TGAATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCTAGGGTGATGGTC 432152 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAA 18331 ||||| |||| || || ||||| || ||||| || || Sbjct 432151 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTGAA 432114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379243749338580