Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq16337 123 2e-23 seq12452 84.2 2e-11 >seq16337 Length=344012 Score = 123 bits (136), Expect = 2e-23 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 |||||||||||||| |||||||| || ||||| || || || ||||| ||||| || | Sbjct 239896 CCACCTCGTCTTTGCTGGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCACTTGATGG 239955 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 | |||| || |||||||||||| | ||| || || |||||||| |||||||| || | Sbjct 239956 TTCCCAGGTTCTGCTGGTTGCTTTTCCTATTACAAGAGTCCTTGTACAGCATGTAAGGGG 240015 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 | || |||||| ||| ||||| ||||| || Sbjct 240016 TCCCGGTCTCGGTCTGAGACTCTATGATGGC 240046 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 22691 GGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCC 22750 |||| ||||||||| |||||||| || |||| ||| ||||| ||||| | ||| Sbjct 237052 GGGCAGCCTTCGTAAGTTTCGTATGGGCCATGCTCTTTGGCGAGTTCACAGCTGGATTCC 237111 Query 22751 AACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTT 22810 || || || ||||| || ||||||||||| | || |||||| ||| || |||| Sbjct 237112 AAAGCACCATAATAAATGGTCTCGAAGATCTGCTGGTTCAACAACTGGGCCTCGGGGCTT 237171 Query 22811 TCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATC 22870 || | || | ||||| | |||||| ||||||| |||||| || || || || || Sbjct 237172 TCAAAGGGGTATCTCATCAGGATGAACGCATCCGCCAGACCCTGCACTCCAATGCCAATG 237231 Query 22871 GGTCG 22875 || || Sbjct 237232 GGACG 237236 >seq12452 Length=479537 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566 || ||||| ||| | | | ||||| |||||||||||||| || || | |||| || Sbjct 161252 GAAGAACCTCTTCTCAGAAAAAATCCTCGTAGATTTGTCATCTTCCCACTCCAATACCCG 161193 Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGT 57622 || || ||||||||||| ||||||||| |||| || || ||||| | ||||| || Sbjct 161192 GATATATGGAACATGTATAAAAAGGCACAAGCTTCCTTCTGGACAGCAGAAGAGGT 161137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445645575017280