Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq12452 105 8e-18 seq2667 89.7 6e-13 >seq12452 Length=479537 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| |||| ||||| | || || || || || ||||| ||||| || || | ||| | Sbjct 148884 CCTCATCTCGGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATCAGACCCCTCTTCT 148943 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||||||||| | ||| || || || || |||||||| ||||| ||||||||||||| Sbjct 148944 TCAGCCAAAATATAGCAGCAAAAGAACCTGAGAAGAAGATCCCTTCCACTGCAGCAAAGG 149003 Query 33724 CAATAAGTCTCTCTCC 33739 ||| | |||||| || Sbjct 149004 CAACCACTCTCTCCCC 149019 Score = 86.0 bits (94), Expect = 8e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 34079 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 34138 ||| ||||| ||||||| || || || | ||||||||||||||| ||||| || || | Sbjct 161136 CACCTCTTCTGCTGTCCAGAAGGAAGCTTGTGCCTTTTTATACATGTTCCATATATCCGG 161195 Query 34139 ATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 ||||||| |||||| || ||||||||| |||||| Sbjct 161196 GTATTGGAGTGGGAAGATGACAAATCTACGAGGATTT 161232 >seq2667 Length=93002 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/123 (76%), Gaps = 8/123 (7%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATC----GTTATACAAGCTTTCATGTTGACTACTGCAGT 188544 || ||||||||||||| |||| || |||||||||| || |||||||||| || Sbjct 27876 GTGACTTTCTATGATG----TATCAGTTGTCTTACAAGCTTTTATTCTGACTACTGCTGT 27821 Query 188545 GTTTCTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAAC 188604 |||||||| ||||| | |||| |||| || |||||||||||||| ||| ||| | | Sbjct 27820 GTTTCTTGGGTTGACTGTGTATACTTTACAGTCCAAGAGAGATTTCAGCAAATTTGGAGC 27761 Query 188605 AGG 188607 ||| Sbjct 27760 AGG 27758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629646887939520