Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq14676 116 3e-21 seq12452 98.7 9e-16 seq16337 82.4 7e-11 >seq14676 Length=200364 Score = 116 bits (128), Expect = 3e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||||||||| || | ||| ||||| || |||| || || Sbjct 115171 TCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAACCCTCTCTTCTTC 115112 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | |||||| || | ||||| || ||||| ||||| ||||| ||||| |||||||| ||| Sbjct 115111 AACCAAAAGATGGATGCAAAGGAGCCAGAGAAGAAAATTCCTTCCACTGCTGCAAAAGCT 115052 Query 11774 ACTACTCTTTCTCC 11787 ||||| | |||||| Sbjct 115051 ACTACACGTTCTCC 115038 Score = 82.4 bits (90), Expect = 7e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959 || |||||||| | | ||| |||||||||||||| || ||||||||||| || || || Sbjct 111803 TAAGTATCTATGAGCAGACTGTACATTTCTGAATGTATGTTTTCCATAGCAATCTGGAAG 111744 Query 11960 CCATAGAAACATCGTGCCTC 11979 ||||||||||| ||||| || Sbjct 111743 CCATAGAAACAGCGTGCTTC 111724 >seq12452 Length=479537 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || |||| || || || ||||| || ||||| | ||| ||||||| || | || || Sbjct 148886 TCATCTCGGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATCAGACCCCTCTTCTTC 148945 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | |||||||||||||||||| ||||| || ||||| || || ||||| || ||||| || Sbjct 148946 AGCCAAAATATAGCAGCAAAAGAACCTGAGAAGAAGATCCCTTCCACTGCAGCAAAGGCA 149005 Query 11774 ACTACTCTTTCTCC 11787 || ||||| || || Sbjct 149006 ACCACTCTCTCCCC 149019 >seq16337 Length=344012 Score = 82.4 bits (90), Expect = 7e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| || || || | || || | ||| || || || || || || ||||||||| Sbjct 235426 ACCTGAAACTCGCCCGAGAGGACCCTGCGTGTGTAGATGTTACTGGTGTAGGGTTCAATG 235485 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 |||||||| || | || || |||| ||||| ||||| |||||||| | | || ||| Sbjct 235486 GACTCATTGTTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATTGGAGAAAGGAGCAGG 235545 Query 37258 CTATTTCT 37265 || ||||| Sbjct 235546 CTGTTTCT 235553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468397806352960