Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2667 122 1e-22 seq14676 111 2e-19 seq12452 102 1e-16 >seq2667 Length=93002 Score = 122 bits (134), Expect = 1e-22 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 |||||| ||||| || |||| | || | | ||| ||||||||||||||||||||||| Sbjct 25450 TTATTTTTTATTTAATGCTTCTAGTAGGCGCAGCAGGTGCAAGAACAGATTGATGATATC 25509 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 ||||||| ||| || | || || | ||| |||||||| || || | || || || | Sbjct 25510 TAAGTAGAGATTAATGGCAGCCAATATATACTCTTCAGGGGACAGTCTGTGCATCAGCAA 25569 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 || ||||||||||| || ||||||||||| | || || || ||||| | | ||| Sbjct 25570 ATGAGTGTCATAGATGATAAATCCGCAGAACAGCAGCGCTCCCGCAGCAGCAAACAACAG 25629 Query 9407 CTCCACTGTTTCACT 9421 ||| | ||| ||||| Sbjct 25630 CTCTATTGTCTCACT 25644 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| |||||||||||||| || |||| |||||| |||||| ||||| Sbjct 27758 CCTGCTCCAAATTTGCTGAAATCTCTCTTGGACTGTAAAGTATACACAGTCAACCCAAGA 27817 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 ||||| ||||||||||| || |||||||| | || || |||||||||||||| || Sbjct 27818 AACACAGCAGTAGTCAGAATAAAAGCTTGTAAGACAACTGATACATCATAGAAAGTCAC 27876 >seq14676 Length=200364 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| || || | ||| || ||||| |||||||| ||||||| || | ||| | Sbjct 115173 CCTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAACCCTCTCTTCT 115114 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | | |||||| ||||| ||||| || ||||| |||||||||||||| ||||| ||||| | Sbjct 115113 TCAACCAAAAGATGGATGCAAAGGAGCCAGAGAAGAAAATTCCTTCCACTGCTGCAAAAG 115054 Query 36300 C 36300 | Sbjct 115053 C 115053 >seq12452 Length=479537 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||| ||||| | || ||||| || || ||||| ||||| || || | ||| | Sbjct 148884 CCTCATCTCGGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATCAGACCCCTCTTCT 148943 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || || || ||||| || ||||| ||||| ||||||| Sbjct 148944 TCAGCCAAAATATAGCAGCAAAAGAACCTGAGAAGAAGATCCCTTCCACTGCAGCAAAGG 149003 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 149004 CAACCACTCTCTCCCC 149019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657994402262560