Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq12452 114 2e-20 seq14676 96.9 5e-15 >seq12452 Length=479537 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||| ||||| | || ||||| || || ||||| ||||| || || | ||| | Sbjct 148884 CCTCATCTCGGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATCAGACCCCTCTTCT 148943 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||||||||||| ||||| || || || |||||||| ||||| ||||| ||||||| Sbjct 148944 TCAGCCAAAATATAGCAGCAAAAGAACCTGAGAAGAAGATCCCTTCCACTGCAGCAAAGG 149003 Query 42207 CAATAAGTCTCTCTCC 42222 ||| | |||||| || Sbjct 149004 CAACCACTCTCTCCCC 149019 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 42563 ACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGA 42622 || |||||| | ||||| || || |||| ||||||||||||||| ||||| ||||| | Sbjct 161137 ACCTCTTCTGCTGTCCAGAAGGAAGCTTGTGCCTTTTTATACATGTTCCATATATCCGGG 161196 Query 42623 TATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658 ||||| | |||||| || ||||||||| |||||| Sbjct 161197 TATTGGAGTGGGAAGATGACAAATCTACGAGGATTT 161232 >seq14676 Length=200364 Score = 96.9 bits (106), Expect = 5e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||||| || ||||| || | ||||| |||||||||||||| |||||||| || || Sbjct 111813 ATCTTTAATGTAAGTATCTATGAGCAGACTGTACATTTCTGAATGTATGTTTTCCATAGC 111754 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 ||||| || || |||||||| | || || || |||||||||||| Sbjct 111753 AATCTGGAAGCCATAGAAACAGCGTGCTTCCGTTACCTGTACTTCT 111708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670957287719840