Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq20616 143 4e-29 seq8995 131 2e-25 >seq20616 Length=1301372 Score = 143 bits (158), Expect = 4e-29 Identities = 212/300 (71%), Gaps = 4/300 (1%) Strand=Plus/Plus Query 8693 GGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCA 8752 ||||| || || ||||| | |||| || || | || ||| | |||| || || Sbjct 789438 GGACAGCCCTTCACGTTATTGCAGATGAGCTTTTGTAGAGAGGCAGTATTGATTATTTCA 789497 Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||||| | |||||| |||||||| ||||||||||| | || || ||||| | || Sbjct 789498 AAGCCCACTTTTCCGCCAAAGGTGCTTGGTTTCCAGTACTCTGGAGAACAGATAGCATTT 789557 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 |||| || ||||| | || || || || || || || | ||| ||||||| |||||| Sbjct 789558 CCCATCAGCCCTTTCAAAGAGAATGGTGCTCCAAGTTCCACCATGGTCTCACCAAAGATG 789617 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 || ||||| ||| |||| || | | || | ||||| ||||| ||| || |||||| Sbjct 789618 GCACCAGGACGAGGCCTTTCTACTAGAAGGCCAGGGTACAGCTCCATAGCATCAATGTCT 789677 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT----TTTATTAATAAA 8988 || ||||| | | ||| || || ||||| ||||||||||| ||||||||||| Sbjct 789678 CCATAAAGCTCTTCTAATTCAGCTGCCATTTCTTTTTCTCCTGTAATAATTATTAATAAA 789737 Score = 95.1 bits (104), Expect = 2e-14 Identities = 138/194 (71%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 10025 TGTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCT 10084 || |||||||||||| || || |||| |||||||| || ||| ||| ||| | Sbjct 794051 TGATCTTACCCCATGGCCGAGAGCTTTGGTGAAGGCTGGCCCTTTGTGGTGATCTGTCTT 794110 Query 10085 AAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGG 10144 ||| |||||||| ||||||||||| |||| || | ||||| | || ||||| || || Sbjct 794111 AAAGAACTGGTGGGTGAAATGTTGAGCAAAGAACGTGAACATCATATTTGTGCCTTGAGG 794170 Query 10145 ATCGGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAG 10204 ||| ||| | || | ||| || ||| ||| |||||||| ||| | ||| || || Sbjct 794171 ATCAGGAAT-AATTTTTTCCTCAGCAGAAATTTCTCCACAACTACTGCAGAATCTGGGAG 794229 Query 10205 AttttttttACCTG 10218 | || ||||||| Sbjct 794230 CTCCTTCTTACCTG 794243 Score = 89.7 bits (98), Expect = 7e-13 Identities = 165/242 (68%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||| | || || || || || || || ||| ||||||||||||| | | || || Sbjct 792627 ATGAGCCTGGTAGTTTGGAAAAGCTGCTCATCATTCCATTCTGGATGCACCTGCTTAAGG 792686 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || || | ||||| || |||||||| || || || |||||||| | ||| || Sbjct 792687 ATGTCACAGACCCGATTGTGCTCTCTGAGCCATATTGTGGCATACATCATTAAACCTGGG 792746 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| ||||| |||| | || |||| | ||| | | || || | || || Sbjct 792747 ACCAAACCAAACACCTCATTGCCTACAGAAAATTGCAGGTGCTTAGGAACATGAGGTGGG 792806 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | |||| || || || | ||| || |||||||| || ||||| ||| Sbjct 792807 TAGATCATTTCTGCCTGAGTGTCCTTCACAGTGGGAGGGTACATTTCTCCATCAATCATC 792866 Query 9862 TG 9863 || Sbjct 792867 TG 792868 >seq8995 Length=201141 Score = 131 bits (144), Expect = 2e-25 Identities = 171/235 (73%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || ||||| | |||||| || | ||||| || || || ||||| ||||| ||||| Sbjct 24530 TCACCGATGAGGATGAGGCGGGCTGTCTGGAAGAGCTGCTCGTCGCTCCACGTCGGATGC 24589 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || | ||||| || || || |||| |||||| || | |||||||| || || |||||| Sbjct 24590 TCCTGCTTCAGCACGTCACAGACTCGGTTGTGCTCGCGAAGCCAGATGGTCGCATACATC 24649 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATAT--TTTCGG 9787 || || || |||| ||||||||| |||| || || |||||||| || | | || || Sbjct 24650 ATTAGCCCCGGCAGCAGGCCAAACACCTCCTGGCCCACAGCCAGCTGCTTTTCCTTGGGG 24709 Query 9788 GCACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATA 9842 | || ||| ||| ||||||||||| ||| | | || ||||| ||| ||||| Sbjct 24710 GTAC--CGGCAGGGTAGATCATGTGAACCGGAGCCTCGAGGACCGTGGGTGGATA 24762 Score = 107 bits (118), Expect = 3e-18 Identities = 196/285 (69%), Gaps = 4/285 (1%) Strand=Plus/Plus Query 8693 GGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCA 8752 ||||||| ||||||||| ||| || || ||||| | || | || |||||| || Sbjct 20920 GGACACCGCTTGACGTTGAGACACACGAGCTTCTGGAGCGAAGCTGTTTTCACGATCTCA 20979 Query 8753 AACCCCACGTCT--CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 || || ||| || || || |||||||| |||||||| |||||||||||||| || Sbjct 20980 AAGCCA--GTCGAGCCACCAAAAGTGCTGGGCTTCCAGTATTCCGGGGAGCAGATGGGGT 21037 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | | | || ||||| ||||||||||| || || | ||| | |||||||| || || | Sbjct 21038 TTCCGAAAAGCCCTTTCAGGGAAAACGGGGCTCCAATCTCCACCATGCTCTCCCCAAAAA 21097 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGT 8930 | | || || | || || | ||| || || | || ||||||| || | |||| Sbjct 21098 TAGTGTCTTTCTGGCGTTTCTCAAGCAACAAACCAGGATAAAACTCCAAGGCATTAATGT 21157 Query 8931 CTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 |||| || || | || || || || | |||| |||||||| Sbjct 21158 CTCCATATAGCTCTTCCAGCTCCGCTGCTTTCTCCTCTTCTCCTG 21202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708332754352960