Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq14676 102 9e-17 >seq14676 Length=200364 Score = 102 bits (112), Expect = 9e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559 ||||| || || || | |||||||||||| || | || |||||||| |||||||| || Sbjct 115171 TCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAACCCTCTCTTCTTC 115112 Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619 |||||||| || || ||||| | || || |||||||| || || || || ||||| || Sbjct 115111 AACCAAAAGATGGATGCAAAGGAGCCAGAGAAGAAAATTCCTTCCACTGCTGCAAAAGCT 115052 Query 21620 ACTAATCGTTCACC 21633 |||| ||||| || Sbjct 115051 ACTACACGTTCTCC 115038 Score = 96.9 bits (106), Expect = 4e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || |||||||| || ||||| || | |||| |||||| ||||||||| | |||| Sbjct 117209 TTCATTTAAAAGTCTGCATCCAAAGTGAAAGAGTTATCTGTGGATTTTGACATTACTCCC 117150 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || || || || || | |||| || || || || || ||||| ||||||| || ||| Sbjct 117149 ATCTTCTGGTATTCTCCTACTCGCTTCTCAAAGAAGTTAGTCTTGCCTTCCAGCGAGATA 117090 Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATAT 21279 |||||||| ||||||||||| || | ||| ||||| Sbjct 117089 TTCTCCATAAAGTCAAATGGATTCTCTGCTTTGAATAT 117052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531756628288160