Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq10790 113 4e-20 seq5255 93.3 4e-14 >seq10790 Length=1503029 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 |||||||| | ||||| ||||| || || || ||| | |||||| | ||| |||| | Sbjct 359758 AAAATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCC 359817 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 | ||||||||| ||| | ||||| || || ||||||||||| || ||||| || Sbjct 359818 AGCGACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGAC 359877 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || || || || | | ||| || || || ||||||| | | | | |||||| Sbjct 359878 CAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTAC 359937 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGG 26992 ||||| || |||||||| ||| | || |||||||| | || |||| Sbjct 359938 AACATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGG 359984 Score = 107 bits (118), Expect = 2e-18 Identities = 162/229 (71%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| || || || ||| | |||||| | || |||| | | | Sbjct 360437 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAGGTAGAGCCCAGC 360496 Query 26829 GACACCATCGAGCAAGTCAAA--CAAAAGATTACCGACAAAGAAGGGATACCTCCCGATC 26886 |||||||| ||| | ||||| ||||| | | ||||||||||| || ||||| || | Sbjct 360497 GACACCATTGAGAATGTCAAGGCCAAAA---TCCAGACAAAGAAGGCATTCCTCCAGACC 360553 Query 26887 AACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATA 26946 | || || || || | | ||| || || || ||||||| | | | | |||||| | Sbjct 360554 AGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACA 360613 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||| || |||||||| ||| | || |||||||| | || |||| || Sbjct 360614 ACATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGG 360662 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| || || || ||| | |||||| | ||| |||| | | | Sbjct 361798 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGC 361857 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| || || ||||||||||| || ||||| || || Sbjct 361858 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 361917 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | | ||| || || || ||||||| | | | | |||||| ||| Sbjct 361918 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 361977 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || |||||||| ||| | || |||||||| | || |||| || Sbjct 361978 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGG 362024 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| || || || ||| | |||||| | ||| |||| | | | Sbjct 362026 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGC 362085 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| || || ||||||||||| || ||||| || || Sbjct 362086 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 362145 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | | ||| || || || ||||||| | | | | |||||| ||| Sbjct 362146 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 362205 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || |||||||| ||| | || |||||||| | || |||| || Sbjct 362206 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGG 362252 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| || || || ||| | |||||| | ||| |||| | | | Sbjct 362480 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGC 362539 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| || || ||||||||||| || ||||| || || Sbjct 362540 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 362599 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | | ||| || || || ||||||| | | | | |||||| ||| Sbjct 362600 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 362659 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 || || |||||||| ||| | || |||||||| Sbjct 362660 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTG 362692 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| || || || ||| | |||||| | || |||| | | | Sbjct 360664 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAGGTAGAGCCCAGC 360723 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| || || ||||||||||| || ||||| || || Sbjct 360724 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 360783 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | | ||| || || || ||||||| | | | | |||||| ||| Sbjct 360784 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 360843 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || |||||||| ||| | || |||||||| | || |||| || Sbjct 360844 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGG 360890 Score = 104 bits (114), Expect = 2e-17 Identities = 160/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| || || || ||| | |||||| | ||| |||| | | | Sbjct 361118 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGC 361177 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| || || ||||||||||| || ||||| || || Sbjct 361178 GACACCATTGAGAATGTCAAGGCCAA-ATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 361236 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | | ||| || || || ||||||| | | | | |||||| ||| Sbjct 361237 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 361296 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || |||||||| ||| | || |||||||| | || |||| || Sbjct 361297 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGG 361343 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| || || || ||| | |||||| | || | ||| | | | Sbjct 361345 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAGT-AGAGCCCAGC 361403 Query 26829 GACACCATCGAGCAAGTCAAA--CAAAAGATTACCGACAAAGAAGGGATACCTCCCGATC 26886 |||||||| ||| | ||||| ||||| | | ||||||||||| || ||||| || | Sbjct 361404 GACACCATTGAGAATGTCAAGGCCAAAA---TCCAGACAAAGAAGGCATTCCTCCAGACC 361460 Query 26887 AACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATA 26946 | || || || || | | ||| || || || ||||||| | | | | |||||| | Sbjct 361461 AGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACA 361520 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||| || |||||||| ||| | || |||||||| | || |||| || Sbjct 361521 ACATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGG 361569 Score = 100 bits (110), Expect = 3e-16 Identities = 160/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| || || || ||| | |||||| | ||| |||| | | | Sbjct 360892 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGC 360951 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| || || ||||||||||| || ||||| || || Sbjct 360952 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 361011 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 | ||| || || | | ||| || || || ||||||| | | | | |||||| ||| Sbjct 361012 C-AAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 361070 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 | ||| |||||||| ||| | || |||||||| | || |||| || Sbjct 361071 A-TCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGG 361116 Score = 100 bits (110), Expect = 3e-16 Identities = 160/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| || || || ||| | |||||| | || | ||| | | | Sbjct 362254 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAGT-AGAGCCCAGC 362312 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| ||| || ||||||||||| || ||||| || || Sbjct 362313 GACACCATTGAGAATGTCAAGGCAAA-ATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 362371 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | | ||| || || || ||||||| | | | | |||||| ||| Sbjct 362372 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 362431 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || |||||||| ||| | || |||||||| | || |||| || Sbjct 362432 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGG 362478 Score = 96.9 bits (106), Expect = 3e-15 Identities = 159/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||| | || || || ||| | |||||| | ||| |||| | | | Sbjct 359988 ATGCAGATCTTTGTGAAACC-TTGACGGGCAAAACCATCACC-TAGAAGTAGAGCCCAGC 360045 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| || || ||||||||||| || ||||| || || Sbjct 360046 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 360105 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | | ||| || || || ||||||| | | | | |||||| ||| Sbjct 360106 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 360165 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || |||||||| ||| | || |||||||| | || |||| || Sbjct 360166 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGG 360212 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/228 (71%), Gaps = 7/228 (3%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| || || | |||| | |||||| | || | ||| | | | Sbjct 360214 ATGCAGATCTTTGTGAAAACCTTGACGGCAAAACC-ATCACCCTAGAGT-AGAGCCCAGC 360271 Query 26829 GACACCATCGAGCAAGTCAAA-CAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||| ||| | ||||| | ||| | | ||||||||||| || ||||| || || Sbjct 360272 GACACCATTGAGAATGTCAAGGCCAAA---TCCAGACAAAGAAGGCATTCCTCCAGACCA 360328 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || || || || | | ||| || || || ||||||| | | | | |||||| || Sbjct 360329 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATG-GCGCACCCTGTCCGACTACAA 360387 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| || |||||||| ||| | || |||||||| | || |||| || Sbjct 360388 CATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGG 360435 Score = 86.0 bits (94), Expect = 6e-12 Identities = 163/232 (70%), Gaps = 11/232 (5%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||| | || || | |||| | |||||| | || | ||| | | | Sbjct 361571 ATGCAGATCTTTGTGAAACC-TTGACGGCAAAACC-ATCACCCTAGAGT-AGAGCCCAGC 361627 Query 26829 GACACCATCGAGCAAGTCAAA--CAAAAGATTACCGACAAAGAAGGGATACCTCCCGATC 26886 |||||||| ||| | ||||| ||||| | | ||||||||||| || ||||| || | Sbjct 361628 GACACCATTGAGAATGTCAAGGCCAAAA---TCCAGACAAAGAAGGCATTCCTCCAGACC 361684 Query 26887 AACAAAGACTCAT-TTAC--GGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACT 26943 | || || || || || | | ||| || || || ||||||| | | | | ||||| Sbjct 361685 AGCAGAGGCTGATCTTGCTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACT 361744 Query 26944 ATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 | ||||| || |||||||| ||| | || |||||||| | || |||| || Sbjct 361745 ACAACATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGG 361796 >seq5255 Length=228244 Score = 93.3 bits (102), Expect = 4e-14 Identities = 110/148 (74%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 71717 GAGGGTAAAATTCACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACT 71776 ||||| || || ||||| | ||||||||||||||||||||| || || || |||||||| Sbjct 88254 GAGGGGAAGATGCACGGGTTCCTACGCATGTACTGGGCCAAGAAAATCCTGGAGTGGACC 88313 Query 71777 CAAACTCCCGAGCAGGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGAC 71836 | | |||||| |||| || |||| | ||||| || |||||| | || || || Sbjct 88314 CGCTC-CCCGAGGAGGCCCTGGAGTTCACCATTTACCTCAACGATCGCTATGAGCTGGAT 88372 Query 71837 GGTCGCGATCCTAACGGTTATGTCGGTT 71864 || || ||||| | ||| || || |||| Sbjct 88373 GGCCGGGATCCCAGCGGCTACGTAGGTT 88400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478532658556480