Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq10790 118 9e-22 seq11386 87.8 2e-12 >seq10790 Length=1503029 Score = 118 bits (130), Expect = 9e-22 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | ||||| ||||| || || || ||| | || ||| | ||||| ||| || Sbjct 359758 AAAATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCC 359817 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | ||||||||| ||| | ||||| || || |||||||||||||| ||||| || Sbjct 359818 AGCGACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGAC 359877 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||||| ||||| | | ||| ||||| || ||||||| | | | | ||| || Sbjct 359878 CAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTAC 359937 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||| || |||||||| || Sbjct 359938 AACATCCAGAAAGAATCCAC 359957 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| || || || ||| | || ||| | ||||| ||| ||| | Sbjct 361798 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGC 361857 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | ||||| || || |||||||||||||| ||||| || || Sbjct 361858 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 361917 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | ||| ||||| || ||||||| | | | | ||| || ||| Sbjct 361918 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 361977 Query 24171 ATTCAAAAAGAATCTAC 24187 || || |||||||| || Sbjct 361978 ATCCAGAAAGAATCCAC 361994 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| || || || ||| | || ||| | ||||| ||| ||| | Sbjct 362026 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGC 362085 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | ||||| || || |||||||||||||| ||||| || || Sbjct 362086 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 362145 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | ||| ||||| || ||||||| | | | | ||| || ||| Sbjct 362146 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 362205 Query 24171 ATTCAAAAAGAATCTAC 24187 || || |||||||| || Sbjct 362206 ATCCAGAAAGAATCCAC 362222 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| || || || ||| | || ||| | ||||| ||| ||| | Sbjct 362480 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGC 362539 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | ||||| || || |||||||||||||| ||||| || || Sbjct 362540 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 362599 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | ||| ||||| || ||||||| | | | | ||| || ||| Sbjct 362600 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 362659 Query 24171 ATTCAAAAAGAATCTAC 24187 || || |||||||| || Sbjct 362660 ATCCAGAAAGAATCCAC 362676 Score = 111 bits (122), Expect = 1e-19 Identities = 145/199 (73%), Gaps = 5/199 (3%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| || || || ||| | || ||| | || || ||| ||| | Sbjct 360437 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAGGTAGAGCCCAGC 360496 Query 24051 GACACCATCGAGCAAGTCAAA--CAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108 |||||||| ||| | ||||| ||||| | | |||||||||||||| ||||| || | Sbjct 360497 GACACCATTGAGAATGTCAAGGCCAAAA---TCCAGACAAAGAAGGCATTCCTCCAGACC 360553 Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATA 24168 | ||||| ||||| | | ||| ||||| || ||||||| | | | | ||| || | Sbjct 360554 AGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACA 360613 Query 24169 ACATTCAAAAAGAATCTAC 24187 |||| || |||||||| || Sbjct 360614 ACATCCAGAAAGAATCCAC 360632 Score = 109 bits (120), Expect = 5e-19 Identities = 143/197 (73%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| || || || ||| | || ||| | ||||| ||| ||| | Sbjct 361118 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGC 361177 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | ||||| || || |||||||||||||| ||||| || || Sbjct 361178 GACACCATTGAGAATGTCAAGGCCAA-ATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 361236 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | ||| ||||| || ||||||| | | | | ||| || ||| Sbjct 361237 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 361296 Query 24171 ATTCAAAAAGAATCTAC 24187 || || |||||||| || Sbjct 361297 ATCCAGAAAGAATCCAC 361313 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| || || || ||| | || ||| | || || ||| ||| | Sbjct 360664 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAGGTAGAGCCCAGC 360723 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | ||||| || || |||||||||||||| ||||| || || Sbjct 360724 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 360783 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | ||| ||||| || ||||||| | | | | ||| || ||| Sbjct 360784 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 360843 Query 24171 ATTCAAAAAGAATCTAC 24187 || || |||||||| || Sbjct 360844 ATCCAGAAAGAATCCAC 360860 Score = 107 bits (118), Expect = 2e-18 Identities = 145/199 (73%), Gaps = 6/199 (3%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| || || || ||| | || ||| | || || ||| ||| | Sbjct 361345 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGA-GTAGAGCCCAGC 361403 Query 24051 GACACCATCGAGCAAGTCAAA--CAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108 |||||||| ||| | ||||| ||||| | | |||||||||||||| ||||| || | Sbjct 361404 GACACCATTGAGAATGTCAAGGCCAAAA---TCCAGACAAAGAAGGCATTCCTCCAGACC 361460 Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATA 24168 | ||||| ||||| | | ||| ||||| || ||||||| | | | | ||| || | Sbjct 361461 AGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACA 361520 Query 24169 ACATTCAAAAAGAATCTAC 24187 |||| || |||||||| || Sbjct 361521 ACATCCAGAAAGAATCCAC 361539 Score = 105 bits (116), Expect = 6e-18 Identities = 143/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| || || || ||| | || ||| | || || ||| ||| | Sbjct 362254 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGA-GTAGAGCCCAGC 362312 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | ||||| ||| || |||||||||||||| ||||| || || Sbjct 362313 GACACCATTGAGAATGTCAAGGCAAA-ATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 362371 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | ||| ||||| || ||||||| | | | | ||| || ||| Sbjct 362372 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 362431 Query 24171 ATTCAAAAAGAATCTAC 24187 || || |||||||| || Sbjct 362432 ATCCAGAAAGAATCCAC 362448 Score = 102 bits (112), Expect = 7e-17 Identities = 145/198 (73%), Gaps = 7/198 (4%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| || || | |||| | || ||| | || || ||| ||| | Sbjct 360214 ATGCAGATCTTTGTGAAAACCTTGACGGCAAAACC-ATCACCCTAGA-GTAGAGCCCAGC 360271 Query 24051 GACACCATCGAGCAAGTCAAA-CAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||| ||| | ||||| | ||| | | |||||||||||||| ||||| || || Sbjct 360272 GACACCATTGAGAATGTCAAGGCCAAA---TCCAGACAAAGAAGGCATTCCTCCAGACCA 360328 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| ||||| | | ||| ||||| || ||||||| | | | | | ||| || || Sbjct 360329 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGC-GCACCCTGTCCGACTACAA 360387 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| || |||||||| || Sbjct 360388 CATCCAGAAAGAATCCAC 360405 Score = 100 bits (110), Expect = 2e-16 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||| | || || || ||| | || ||| | ||||| ||| ||| | Sbjct 359988 ATGCAGATCTTTGTGAAACC-TTGACGGGCAAAACCATCACC-TAGAAGTAGAGCCCAGC 360045 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | ||||| || || |||||||||||||| ||||| || || Sbjct 360046 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 360105 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | ||| ||||| || ||||||| | | | | ||| || ||| Sbjct 360106 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 360165 Query 24171 ATTCAAAAAGAATCTAC 24187 || || |||||||| || Sbjct 360166 ATCCAGAAAGAATCCAC 360182 Score = 100 bits (110), Expect = 2e-16 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| || || || ||| | || ||| | ||||| ||| ||| | Sbjct 360892 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGC 360951 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | ||||| || || |||||||||||||| ||||| || || Sbjct 360952 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 361011 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || ||||| | | ||| ||||| || ||||||| | | | | ||| || ||| Sbjct 361012 CA-AGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 361070 Query 24171 ATTCAAAAAGAATCTAC 24187 | ||| |||||||| || Sbjct 361071 A-TCAGAAAGAATCCAC 361086 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/202 (72%), Gaps = 11/202 (5%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||| | || || | |||| | || ||| | || || ||| ||| | Sbjct 361571 ATGCAGATCTTTGTGAAACC-TTGACGGCAAAACC-ATCACCCTAGA-GTAGAGCCCAGC 361627 Query 24051 GACACCATCGAGCAAGTCAAA--CAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108 |||||||| ||| | ||||| ||||| | | |||||||||||||| ||||| || | Sbjct 361628 GACACCATTGAGAATGTCAAGGCCAAAA---TCCAGACAAAGAAGGCATTCCTCCAGACC 361684 Query 24109 AACAGAGACTGAT-TTAC--GGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATT 24165 | ||||| ||||| || | | ||| ||||| || ||||||| | | | | ||| | Sbjct 361685 AGCAGAGGCTGATCTTGCTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACT 361744 Query 24166 ATAACATTCAAAAAGAATCTAC 24187 | ||||| || |||||||| || Sbjct 361745 ACAACATCCAGAAAGAATCCAC 361766 >seq11386 Length=1204925 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | ||||| || || | ||||| || | || ||| | || || ||| | Sbjct 432116 CAACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTAGAGGTTGAGCC 432175 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || ||||| || ||| | ||||| |||||| |||||||||||||| || || || Sbjct 432176 CAGTGACACTATTGAGAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATCCCACCTGA 432235 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 || ||||| ||||| | | |||||||| || ||||||| Sbjct 432236 CCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATG 432276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429822379201020