Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq14676 111 2e-19 seq12452 102 1e-16 seq16337 82.4 1e-10 >seq14676 Length=200364 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| || || | ||| || ||||| |||||||| ||||||| || | ||| | Sbjct 115173 CCTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAACCCTCTCTTCT 115114 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | | |||||| ||||| ||||| || ||||| |||||||||||||| ||||| ||||| | Sbjct 115113 TCAACCAAAAGATGGATGCAAAGGAGCCAGAGAAGAAAATTCCTTCCACTGCTGCAAAAG 115054 Query 32803 C 32803 | Sbjct 115053 C 115053 >seq12452 Length=479537 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| |||| ||||| | || ||||| || || ||||| ||||| || || | ||| | Sbjct 148884 CCTCATCTCGGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATCAGACCCCTCTTCT 148943 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||||||||| | ||||| || || || ||||| || ||||| ||||| ||||||| Sbjct 148944 TCAGCCAAAATATAGCAGCAAAAGAACCTGAGAAGAAGATCCCTTCCACTGCAGCAAAGG 149003 Query 32803 CAATAAGTCTCTCTCC 32818 ||| | |||||| || Sbjct 149004 CAACCACTCTCTCCCC 149019 Score = 82.4 bits (90), Expect = 1e-10 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 33158 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 33217 ||| ||||| ||||||| || || || | ||||||||||||||| ||||| || || | Sbjct 161136 CACCTCTTCTGCTGTCCAGAAGGAAGCTTGTGCCTTTTTATACATGTTCCATATATCCGG 161195 Query 33218 ATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTT 33257 ||||| | ||| || || ||||||||| ||||||||| Sbjct 161196 GTATTGGAGTGGGAAGATGACAAATCTACGAGGATTTTTT 161235 >seq16337 Length=344012 Score = 82.4 bits (90), Expect = 1e-10 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 62426 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 62485 ||| | || || |||||||| || | || | || |||||||| || | || || ||| Sbjct 237058 CCTTCGTAAGTTTCGTATGGGCCATGCTCTTTGGCGAGTTCACAGCTGGATTCCAAAGCA 237117 Query 62486 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAAT 62545 || ||||||||||| |||||||||| || || | || || || |||| ||||| Sbjct 237118 CCATAATAAATGGTCTCGAAGATCTGCTGGTTCAACAACTGGGCCTCGGGGCTTTCAAAG 237177 Query 62546 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 62605 || || | | || || ||||| || || | || || || ||||| || || || | | Sbjct 237178 GGGTATCTCATCAGGATGAACGCATCCGCCAGACCCTGCACTCCAATGCCAATGGGACGA 237237 Query 62606 TGTCTCTTATTAGAGATTTCAGC 62628 || | || || |||| ||||| Sbjct 237238 TGGCGTTTGTTGGAGAGCTCAGC 237260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633460254046400