Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq10790 127 2e-24 >seq10790 Length=1503029 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| || || || ||||| |||| || ||||| || ||| | Sbjct 361798 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGC 361857 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| ||||| |||||||| || || ||||| || || || Sbjct 361858 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 361917 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || |||||||| || ||| | || ||| |||||| | ||||| |||||| Sbjct 361918 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 361977 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||||||||| | || || || |||| | || || ||| Sbjct 361978 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGGT 362025 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| || || || ||||| |||| || ||||| || ||| | Sbjct 362026 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGC 362085 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| ||||| |||||||| || || ||||| || || || Sbjct 362086 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 362145 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || |||||||| || ||| | || ||| |||||| | ||||| |||||| Sbjct 362146 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 362205 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||||||||| | || || || |||| | || || ||| Sbjct 362206 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGGT 362253 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| || || || ||||| |||| || ||||| || ||| | Sbjct 362480 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGC 362539 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| ||||| |||||||| || || ||||| || || || Sbjct 362540 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 362599 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || |||||||| || ||| | || ||| |||||| | ||||| |||||| Sbjct 362600 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 362659 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATT 22436 || || ||||||||||| | || || || |||| || Sbjct 362660 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGTTT 362697 Score = 123 bits (136), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 22210 TTTGTAAAGA---TGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAA 22266 |||||| ||| |||| || ||||| ||||| || || || ||||| |||| || ||| Sbjct 359749 TTTGTACAGAAAATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAA 359808 Query 22267 GTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATT 22326 || || ||| ||| ||| | || || |||| ||||| || ||||| || || ||| Sbjct 359809 GTAGAGCCCAGCGACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATT 359868 Query 22327 CCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTC 22386 || || || || || | || || |||||||| || ||| | || ||| |||||| | Sbjct 359869 CCTCCAGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTG 359928 Query 22387 TCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||||| |||||||| || ||||||||||| | || || || |||| Sbjct 359929 TCCGACTACAACATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCG 359975 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| || || || ||||| |||| || || || || ||| | Sbjct 360664 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAGGTAGAGCCCAGC 360723 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| ||||| |||||||| || || ||||| || || || Sbjct 360724 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 360783 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || |||||||| || ||| | || ||| |||||| | ||||| |||||| Sbjct 360784 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 360843 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||||||||| | || || || |||| | || || ||| Sbjct 360844 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGGT 360891 Score = 120 bits (132), Expect = 3e-22 Identities = 164/228 (72%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| || || || ||||| |||| || ||||| || ||| | Sbjct 361118 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGC 361177 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| ||| | |||||||| || || ||||| || || || Sbjct 361178 GACACCATTGAGAATGTCAAGGCCAAA-TCCAAGACAAAGAAGGCATTCCTCCAGACCAG 361236 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || |||||||| || ||| | || ||| |||||| | ||||| |||||| Sbjct 361237 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 361296 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||||||||| | || || || |||| | || || ||| Sbjct 361297 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGGT 361344 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||| ||| | | || ||||| |||| || ||||| || ||| | Sbjct 359988 ATGCAGATCTTTGTGAAACCTTGA-CGGGCAAAACCATCAC-CTAGAAGTAGAGCCCAGC 360045 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| ||||| |||||||| || || ||||| || || || Sbjct 360046 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 360105 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || |||||||| || ||| | || ||| |||||| | ||||| |||||| Sbjct 360106 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 360165 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||||||||| | || || || |||| | || || ||| Sbjct 360166 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGGT 360213 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| || || || ||||| |||| || || || || ||| | Sbjct 362254 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGA-GTAGAGCCCAGC 362312 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| |||| | |||||||| || || ||||| || || || Sbjct 362313 GACACCATTGAGAATGTCAAGGCAAAA-TCCAAGACAAAGAAGGCATTCCTCCAGACCAG 362371 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || |||||||| || ||| | || ||| |||||| | ||||| |||||| Sbjct 362372 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 362431 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||||||||| | || || || |||| | || || ||| Sbjct 362432 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGGT 362479 Score = 114 bits (126), Expect = 1e-20 Identities = 163/228 (71%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| || || || ||||| |||| || || || || ||| | Sbjct 360437 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAGGTAGAGCCCAGC 360496 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| ||||| || ||||| || || ||||| || || || Sbjct 360497 GACACCATTGAGAATGTCAAGGCCAAAATCCA-GACAAAGAAGGCATTCCTCCAGACCAG 360555 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || |||||||| || ||| | || ||| |||||| | ||||| |||||| Sbjct 360556 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 360615 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||||||||| | || || || |||| | || || ||| Sbjct 360616 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGGT 360663 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| || || || ||||| |||| || || || || ||| | Sbjct 361345 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGA-GTAGAGCCCAGC 361403 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| ||||| || ||||| || || ||||| || || || Sbjct 361404 GACACCATTGAGAATGTCAAGGCCAAAATCCA-GACAAAGAAGGCATTCCTCCAGACCAG 361462 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || |||||||| || ||| | || ||| |||||| | ||||| |||||| Sbjct 361463 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 361522 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||||||||| | || || || |||| | || || ||| Sbjct 361523 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGGT 361570 Score = 100 bits (110), Expect = 2e-16 Identities = 162/228 (71%), Gaps = 5/228 (2%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| || || || ||||| |||| || || || || ||| | Sbjct 360214 ATGCAGATCTTTGTGAAAACCTTGAC-GGCAAAACCATCACCCTAGA-GTAGAGCCCAGC 360271 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| ||| || |||||| || || ||||| || || || Sbjct 360272 GACACCATTGAGAATGTCAAGGCCAAA--TCCAGACAAAGAAGGCATTCCTCCAGACCAG 360329 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || |||||||| || ||| | || ||| | ||||| | ||||| |||||| Sbjct 360330 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGC-GCACCCTGTCCGACTACAAC 360388 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||||||||| | || || || |||| | || || ||| Sbjct 360389 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGGT 360436 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 7/231 (3%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||| ||| | ||| ||||| |||| || || || || ||| | Sbjct 361571 ATGCAGATCTTTGTGAAACCTTGA--CGGCAAAACCATCACCCTAGA-GTAGAGCCCAGC 361627 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| ||||| || ||||| || || ||||| || || || Sbjct 361628 GACACCATTGAGAATGTCAAGGCCAAAATCCA-GACAAAGAAGGCATTCCTCCAGACCAG 361686 Query 22339 CAACGTCTTATATT---TGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || | || || || |||||| || ||| | || ||| |||||| | ||||| ||| Sbjct 361687 CAGAGGCTGATCTTGCTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTAC 361746 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || ||||||||||| | || || || |||| | || || ||| Sbjct 361747 AACATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGGT 361797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419617076907460