Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq10790 192 1e-43 seq6765 102 2e-16 >seq10790 Length=1503029 Score = 192 bits (212), Expect = 1e-43 Identities = 181/228 (79%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||||||| || ||||| ||||| |||||||| || ||||| Sbjct 362024 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 361965 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||| | |||||| ||||| || || || || || ||||| || ||| Sbjct 361964 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 361905 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTAC 68413 |||||||| |||||||| || || |||||||| ||| |||||||| |||| ||||| Sbjct 361904 ATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTC-GCTGGGCTCTAC 361846 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| | |||||||||||| ||||| | ||| || || || |||||||| Sbjct 361845 TTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 361798 Score = 192 bits (212), Expect = 1e-43 Identities = 181/228 (79%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||||||| || ||||| ||||| |||||||| || ||||| Sbjct 362252 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 362193 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||| | |||||| ||||| || || || || || ||||| || ||| Sbjct 362192 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 362133 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTAC 68413 |||||||| |||||||| || || |||||||| ||| |||||||| |||| ||||| Sbjct 362132 ATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTC-GCTGGGCTCTAC 362074 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| | |||||||||||| ||||| | ||| || || || |||||||| Sbjct 362073 TTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 362026 Score = 188 bits (208), Expect = 1e-42 Identities = 179/226 (79%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 68238 CCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGT 68297 || || ||||||| |||||||| || ||||| ||||| |||||||| || ||||| || Sbjct 359984 CCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGG 359925 Query 68298 GTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATG 68357 || | ||||||||| | |||||| ||||| || || || || || ||||| || |||||| Sbjct 359924 GTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATG 359865 Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTC 68416 ||||| ||||| || || || |||||||| ||| |||||||| |||| |||||||| Sbjct 359864 CCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTC-GCTGGGCTCTACTTC 359806 Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | |||||||||||| ||||| | ||| || || || ||||||||| Sbjct 359805 TAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATT 359760 Score = 188 bits (208), Expect = 1e-42 Identities = 180/228 (79%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||||||| || ||||| ||||| |||||||| || ||||| Sbjct 360890 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 360831 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||| | |||||| ||||| || || || || || ||||| || ||| Sbjct 360830 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 360771 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTAC 68413 |||||||| |||||||| || || |||||||| ||| |||||||| |||| ||||| Sbjct 360770 ATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTC-GCTGGGCTCTAC 360712 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||||||| ||||| | ||| || || || |||||||| Sbjct 360711 CTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 360664 Score = 188 bits (208), Expect = 1e-42 Identities = 181/228 (79%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||||||| || ||||| ||||| |||||||| || ||||| Sbjct 361343 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 361284 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||| | |||||| ||||| || || || || || ||||| || ||| Sbjct 361283 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 361224 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 |||||||| |||||||| || || |||||||| ||| |||||||| ||| | ||||| Sbjct 361223 ATGCCTTCTTTGTCTTGGAT-TTGGCCTTGACATTCTCAATGGTGTC-GCTGGGCTCTAC 361166 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| | |||||||||||| ||||| | ||| || || || |||||||| Sbjct 361165 TTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 361118 Score = 185 bits (204), Expect = 2e-41 Identities = 181/228 (79%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||||||| || ||||| ||||| |||||||| || ||||| Sbjct 360212 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 360153 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||| | |||||| ||||| || || || || || ||||| || ||| Sbjct 360152 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 360093 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 |||||||| |||||||| || || |||||||| ||| |||||||| ||| | ||||| Sbjct 360092 ATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTC-GCTGGGCTCTAC 360034 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||||||| ||||| | ||| || || || |||||||| Sbjct 360033 TT-CTAGGTGATGGTTTTGCCCGTCAAGGT-TTCACAAAGATCTGCAT 359988 Score = 185 bits (204), Expect = 2e-41 Identities = 181/228 (79%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||||||| || ||||| ||||| |||||||| || ||||| Sbjct 362478 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 362419 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||| | |||||| ||||| || || || || || ||||| || ||| Sbjct 362418 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 362359 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 |||||||| |||||||| || ||||||||||| ||| |||||||| ||| | ||||| Sbjct 362358 ATGCCTTCTTTGTCTTGGAT-TTTGCCTTGACATTCTCAATGGTGTC-GCTGGGCTCTAC 362301 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||||||| ||||| | ||| || || || |||||||| Sbjct 362300 -TCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 362254 Score = 185 bits (204), Expect = 2e-41 Identities = 172/216 (80%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 |||| |||||||| || ||||| ||||| |||||||| || ||||| || || | |||| Sbjct 362694 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 362635 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||| | |||||| ||||| || || || || || ||||| || ||||||||||| ||| Sbjct 362634 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 362575 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGTGAT 68425 ||||| || || |||||||| ||| |||||||| |||| |||||||| | |||||| Sbjct 362574 TCTTGGATTTTGGCCTTGACATTCTCAATGGTGTC-GCTGGGCTCTACTTCTAGGGTGAT 362516 Query 68426 GGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| ||||| | ||| || || || |||||||| Sbjct 362515 GGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 362480 Score = 181 bits (200), Expect = 2e-40 Identities = 180/228 (79%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||||||| || ||||| ||||| || ||||| || ||||| Sbjct 361116 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTG-ATGTTGTAGTCGGAC 361058 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||| | |||||| ||||| || || || ||| | ||||| || ||| Sbjct 361057 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTT-GCTGGTCTGGAGGA 360999 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTAC 68413 |||||||| |||||||| || || |||||||| ||| |||||||| |||| ||||| Sbjct 360998 ATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTC-GCTGGGCTCTAC 360940 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| | |||||||||||| ||||| | ||| || || || |||||||| Sbjct 360939 TTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 360892 Score = 179 bits (198), Expect = 7e-40 Identities = 179/228 (79%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||||||| || ||||| ||||| |||||||| || ||||| Sbjct 360662 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 360603 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||| | |||||| ||||| || || || || || ||||| || ||| Sbjct 360602 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 360543 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 |||||||| ||||| || || || |||||||| ||| |||||||| ||| | ||||| Sbjct 360542 ATGCCTTCTTTGTC-TGGATTTTGGCCTTGACATTCTCAATGGTGTC-GCTGGGCTCTAC 360485 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||||||| ||||| | ||| || || || |||||||| Sbjct 360484 CTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 360437 Score = 176 bits (194), Expect = 8e-39 Identities = 179/228 (79%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||||||| || ||||| ||||| |||||||| || ||||| Sbjct 361569 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 361510 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||| | |||||| ||||| || || || || || ||||| || ||| Sbjct 361509 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 361450 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 |||||||| ||||| || || || |||||||| ||| |||||||| ||| | ||||| Sbjct 361449 ATGCCTTCTTTGTC-TGGATTTTGGCCTTGACATTCTCAATGGTGTC-GCTGGGCTCTAC 361392 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||||||| ||||| | ||| || || || |||||||| Sbjct 361391 -TCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 361345 Score = 156 bits (172), Expect = 8e-33 Identities = 176/228 (77%), Gaps = 7/228 (3%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||||||| || ||||| ||||| |||||||| || ||||| Sbjct 360435 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 360376 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || |||||| | |||||| ||||| || || || || || ||||| || ||| Sbjct 360375 AGGGTGCGCC-ATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 360317 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 |||||||| |||||| || || |||||||| ||| |||||||| ||| | ||||| Sbjct 360316 ATGCCTTCTTTGTCTGGA--TTTGGCCTTGACATTCTCAATGGTGTC-GCTGGGCTCTAC 360260 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| |||| |||| | ||| || || || |||||||| Sbjct 360259 -TCTAGGGTGATGG-TTTTGCCGTCAAGGTTTTCACAAAGATCTGCAT 360214 Score = 154 bits (170), Expect = 3e-32 Identities = 178/231 (77%), Gaps = 9/231 (4%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||||||| || ||||| ||||| |||||||| || ||||| Sbjct 361796 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 361737 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGA---ATATGAGTCTTTGTTGGTCGGGT 68351 || || | ||||||||| | |||||| ||||| | | || || || || ||||| || Sbjct 361736 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAGCAAGATCAGCCTCTGCTGGTCTGGA 361677 Query 68352 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTC 68410 ||||||||||| ||||| || || || |||||||| ||| |||||||| ||| | || Sbjct 361676 GGAATGCCTTCTTTGTC-TGGATTTTGGCCTTGACATTCTCAATGGTGTC-GCTGGGCTC 361619 Query 68411 TACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| || | |||||||| |||| |||| | ||| || || || |||||||| Sbjct 361618 TAC-TCTAGGGTGATGG-TTTTGCCGTCAAGGT-TTCACAAAGATCTGCAT 361571 >seq6765 Length=263482 Score = 102 bits (112), Expect = 2e-16 Identities = 87/105 (83%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTC 68416 || |||||||| || ||||| |||||||| |||||||||||| |||| || || || Sbjct 183083 CCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC-GCTGGGCTCCACCTC 183025 Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||||||| ||||| ||||| || ||||| |||||||| Sbjct 183024 CAAGGTGATGGTTTTGCCCGTCAGGGTTTTCACGAAGATCTGCAT 182980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921372594248480