Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq20616 140 5e-28 seq8995 98.7 1e-15 >seq20616 Length=1301372 Score = 140 bits (154), Expect = 5e-28 Identities = 200/282 (71%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 8894 GGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCT 8953 ||||| |||||||| || || ||||| || | | || || || | || || Sbjct 789438 GGACAGCCCTTCACGTTATTGCAGATGAGCTTTTGTAGAGAGGCAGTATTGATTATTTCA 789497 Query 8954 AAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTC 9013 || || || | ||||| |||||||| |||||||||||| | || || ||||| | || Sbjct 789498 AAGCCCACTTTTCCGCCAAAGGTGCTTGGTTTCCAGTACTCTGGAGAACAGATAGCATTT 789557 Query 9014 GCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATG 9073 |||| ||||||||||| || || || || || || || | ||| ||||||| |||||| Sbjct 789558 CCCATCAGCCCTTTCAAAGAGAATGGTGCTCCAAGTTCCACCATGGTCTCACCAAAGATG 789617 Query 9074 GCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCG 9133 ||||| ||||| || |||| || | | ||||| ||| || || | ||| || | ||| Sbjct 789618 GCACCAGGACGAGGCCTTTCTACTAGAAGGCCAGGGTACAGCTCCATAGCATCAATGTCT 789677 Query 9134 CCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||||| || |||| || || || || || || || || ||| Sbjct 789678 CCATAAAGCTCTTCTAATTCAGCTGCCATTTCTTTTTCTCCT 789719 Score = 136 bits (150), Expect = 6e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795 || ||||| || | |||||| ||| |||||| || || | || || || | || ||| Sbjct 792636 GTAGTTTGGAAAAGCTGCTCATCATTCCATTCTGGATGCACCTGCTTAAGGATGTCACAG 792695 Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855 |||| ||||| ||||| |||||||| ||||| |||||||||||||| || || |||||| Sbjct 792696 ACCCGATTGTGCTCTCTGAGCCATATTGTGGCATACATCATTAAACCTGGGACCAAACCA 792755 Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATA 9915 ||||| ||||| || || | ||| |||| | | || || | || | || | ||| Sbjct 792756 AACACCTCATTGCCTACAGAAAATTGCAGGTGCTTAGGAACATGAGGTGGGTAGATCATT 792815 Query 9916 TGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 | |||| || || || || ||||| || |||||||| || ||||| | ||| Sbjct 792816 TCTGCCTGAGTGTCCTTCACAGTGGGAGGGTACATTTCTCCATCAATCATCTG 792868 >seq8995 Length=201141 Score = 98.7 bits (108), Expect = 1e-15 Identities = 195/287 (68%), Gaps = 4/287 (1%) Strand=Plus/Plus Query 8894 GGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCT 8953 ||||| | ||| || ||| ||| | ||| ||| | | || ||||||||||| || Sbjct 20920 GGACACCGCTTGACGTTGAGACACACGAGCTTCTGGAGCGAAGCTGTTTTCACGATCTCA 20979 Query 8954 AAACCTACGTC--CCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGT 9011 || || ||| || || || |||||||| |||||||| |||||||||||||| || Sbjct 20980 AAGCC--AGTCGAGCCACCAAAAGTGCTGGGCTTCCAGTATTCCGGGGAGCAGATGGGGT 21037 Query 9012 TCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGA 9071 | | | |||||||||| ||||||||| || || | ||| | |||||||| || || | Sbjct 21038 TTCCGAAAAGCCCTTTCAGGGAAAACGGGGCTCCAATCTCCACCATGCTCTCCCCAAAAA 21097 Query 9072 TGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGT 9131 | | | | |||| || | | || |||| || | || | || | | || Sbjct 21098 TAGTGTCTTTCTGGCGTTTCTCAAGCAACAAACCAGGATAAAACTCCAAGGCATTAATGT 21157 Query 9132 CGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 | ||||| || |||||| ||| || ||| |||||| || ||| || Sbjct 21158 CTCCATATAGCTCTTCCAGCTCCGCTGCTTTCTCCTCTTCTCCTGCA 21204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723531833525600