Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq10790 93.3 3e-14 >seq10790 Length=1503029 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| | |||||||| ||||| |||| |||| |||||| || || || || |||| | Sbjct 362706 CCGCCCCTTAAACGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 362647 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| |||| || || ||| |||| || | | |||||| || | || Sbjct 362646 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 362587 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGT--CTGCGCTTTCCA 39670 | |||||||||||| ||||| || | || | | |||| ||| || || | Sbjct 362586 ATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGC--TCTA 362529 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | || || ||||| ||||| || ||||| || ||||||||||| Sbjct 362528 CTTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 362480 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 39496 CCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAA 39555 ||||| | ||||| ||||| |||| |||| |||||| || || || || |||| || Sbjct 359984 CCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGG 359925 Query 39556 ACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACG 39615 ||| |||| |||| || || ||| |||| || | | |||||| || | || | | Sbjct 359924 GTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATG 359865 Query 39616 CCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGT--CTGCGCTTTCCACGT 39673 ||||||||||| ||||| || | || | | |||| ||| || || || | Sbjct 359864 CCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGC--TCTACTT 359807 Query 39674 CCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | | || || ||||| ||||| || ||||| || ||||||||||| Sbjct 359806 CTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 359761 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | ||||| ||||| |||| |||| |||||| || || || || |||| | Sbjct 360890 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 360831 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| |||| || || ||| |||| || | | |||||| || | || Sbjct 360830 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 360771 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGT--CTGCGCTTTCCA 39670 | |||||||||||| ||||| || | || | | |||| ||| || || | Sbjct 360770 ATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGC--TCTA 360713 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | || || ||||| ||||| || ||||| || ||||||||||| Sbjct 360712 CCTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 360664 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | ||||| ||||| |||| |||| |||||| || || || || |||| | Sbjct 362024 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 361965 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| |||| || || ||| |||| || | | |||||| || | || Sbjct 361964 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 361905 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGT--CTGCGCTTTCCA 39670 | |||||||||||| ||||| || | || | | |||| ||| || || | Sbjct 361904 ATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGC--TCTA 361847 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | || || ||||| ||||| || ||||| || ||||||||||| Sbjct 361846 CTTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 361798 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | ||||| ||||| |||| |||| |||||| || || || || |||| | Sbjct 362252 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 362193 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| |||| || || ||| |||| || | | |||||| || | || Sbjct 362192 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 362133 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGT--CTGCGCTTTCCA 39670 | |||||||||||| ||||| || | || | | |||| ||| || || | Sbjct 362132 ATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGC--TCTA 362075 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | || || ||||| ||||| || ||||| || ||||||||||| Sbjct 362074 CTTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 362026 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/228 (69%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | ||||| ||||| |||| |||| |||||| || || || || |||| | Sbjct 361343 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 361284 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| |||| || || ||| |||| || | | |||||| || | || Sbjct 361283 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 361224 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTA-ATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | |||||||||||| |||| || | || || | ||| ||| || || || Sbjct 361223 ATGCCTTCTTTGTCTTGGATTTGGCCTTGACATTCTCAATGGTGTCGCTGGGC--TCTAC 361166 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || || ||||| ||||| || ||||| || ||||||||||| Sbjct 361165 TTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 361118 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/228 (69%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | ||||| ||||| |||| |||| |||||| || || || || |||| | Sbjct 362478 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 362419 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| |||| || || ||| |||| || | | |||||| || | || Sbjct 362418 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 362359 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTA-ATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | |||||||||||| ||||| || | || || | ||| ||| ||| | | Sbjct 362358 ATGCCTTCTTTGTCTTGGATTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTAC-- 362301 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || || ||||| ||||| || ||||| || ||||||||||| Sbjct 362300 -TCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 362254 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/229 (69%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | ||||| ||||| |||| |||| |||||| || || || || |||| | Sbjct 360662 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 360603 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| |||| || || ||| |||| || | | |||||| || | || Sbjct 360602 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 360543 Query 39613 ACGCCTTCTTTGTC-GCATATTTTTTGTTTA-ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | |||||||||||| | || ||| || | || || | ||| ||| || || | Sbjct 360542 ATGCCTTCTTTGTCTGGAT-TTTGGCCTTGACATTCTCAATGGTGTCGCTGGGC--TCTA 360486 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | || || ||||| ||||| || ||||| || ||||||||||| Sbjct 360485 CCTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 360437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347277799333172