Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq14676 114 1e-20 seq12452 96.9 4e-15 seq16337 89.7 6e-13 >seq14676 Length=200364 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||||||||| || | |||||||| | ||||| || | Sbjct 115173 CCTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAACCCTCTCTTCT 115114 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | ||||| || || || ||||| || ||||| ||||| || ||||| ||||||||||||| Sbjct 115113 TCAACCAAAAGATGGATGCAAAGGAGCCAGAGAAGAAAATTCCTTCCACTGCTGCAAAAG 115054 Query 19103 CAACTAGTCTTTCTCC 19118 | |||| | |||||| Sbjct 115053 CTACTACACGTTCTCC 115038 Score = 100 bits (110), Expect = 3e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 19221 TGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTAT 19280 || |||||||| || | |||||| | | |||||||||||||||||| || ||||| || Sbjct 111816 TGGATCTTTAATGTAAGTATCTATGAGCAGACTGTACATTTCTGAATGTATGTTTTCCAT 111757 Query 19281 AGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 ||| ||||| || || || ||||| | |||||| |||| ||||||||| Sbjct 111756 AGCAATCTGGAAGCCATAGAAACAGCGTGCTTCCGTTACCTGTACTTC 111709 Score = 84.2 bits (92), Expect = 2e-11 Identities = 104/141 (74%), Gaps = 6/141 (4%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT---CATTACTCCCAT 18668 |||||| || ||||||||| ||||| || ||| | || || |||||||||||| Sbjct 117204 TTAAAAGTCTGCATCCAAAGTGAAAGAGTTATCTG---TGGATTTTGACATTACTCCCAT 117148 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 || || ||||| | |||| || |||||||| ||||| || || || | || ||| Sbjct 117147 CTTCTGGTATTCTCCTACTCGCTTCTCAAAGAAGTTAGTCTTGCCTTCCAGCGAGATATT 117088 Query 18729 TTCCATAAAATCAAATGGATT 18749 |||||||| ||||||||||| Sbjct 117087 CTCCATAAAGTCAAATGGATT 117067 >seq12452 Length=479537 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||| || || | ||||| || ||||| | ||||||||||| || || || | Sbjct 148884 CCTCATCTCGGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATCAGACCCCTCTTCT 148943 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| ||||||| |||||| || || || ||||| || ||||| ||||| ||||| | Sbjct 148944 TCAGCCAAAATATAGCAGCAAAAGAACCTGAGAAGAAGATCCCTTCCACTGCAGCAAAGG 149003 Query 19103 CAACTAGTCTTTCTCC 19118 |||| | ||| || || Sbjct 149004 CAACCACTCTCTCCCC 149019 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 19462 ACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGA 19521 || ||||| ||||||| || ||||| | ||| ||||||||||||||||||||||| | Sbjct 161137 ACCTCTTCTGCTGTCCAGAAGGAAGCTTGTGCCTTTTTATACATGTTCCATATATCCGGG 161196 Query 19522 TATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAATAGGTTC--CATTT 19579 ||||| | || || || ||||||||| ||||| | | |||| |||||| ||||| Sbjct 161197 TATTGGAGTGGGAAGATGACAAATCTACGAGGATTTTTTCTGAGAAGAGGTTCTTCATTT 161256 >seq16337 Length=344012 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||| ||||| || || | ||| ||| | || |||| |||||| || | Sbjct 231667 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGCTCTGCAATATGGATGT 231726 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | || || || ||||||||||| || || ||||| ||||||||||| | | || | Sbjct 231727 TCAGGGACTGGCTCTGATCAATGAAAGCGCCTCTGTCAGCTGCCATTTTGAGGATGGTCT 231786 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || ||||| || || ||||| | || || | ||| ||||| Sbjct 231787 TCTGGGAGATTTCCCAGACCGTCTTATAGAGCTGCTTCAAGTCATCTGG 231835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561956440409760