Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq15322 102 7e-17 >seq15322 Length=929654 Score = 102 bits (112), Expect = 7e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || ||||| || || ||||| || ||||| || || ||||||||||| || || || Sbjct 719394 AGGCCTGTGACATGGGCAATCATATATGTGAGCAGTGAATAGCTGGCGATATTGAAAGGC 719453 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 ||||| || |||||||| || || ||||| || | ||| || || || || || | Sbjct 719454 ACCCCCAGTCCCATGTCTCCAGATCTCTGATACAACTGGCAAGACAGTTCACCATTTAGA 719513 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 || |||||||| |||| | ||||| ||||| | |||||| || Sbjct 719514 ACATAAAACTGGCACAGAGCATGGCAAGGAGGCAAAGCCATTAG 719557 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 30149 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30208 |||| || |||| || ||||| || || ||||||||||| || ||||| ||||||| | Sbjct 730127 TCATATCTTTGTATTCAGCTCCAAAGTGTCTCCACTGGAAACCATACACTGGTCCCAAAT 730186 Query 30209 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 | || ||| |||| ||| || || ||||| || | | || || ||||| | Sbjct 730187 CCCCTTCTGTTCTGTCAGTGAAACCTTGTTTATCCAAGAATTTACGTGATCCATTGGCAT 730246 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||| ||||| || || || | ||||||||||| | ||||| || || Sbjct 730247 CCCAAATCTTCACTCCTTTTGCAGAGAGCTCTTTAGCATTTGTTGAACC 730295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408509613094532