Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq9858 147 4e-30 seq8012 127 4e-24 seq16337 105 1e-17 seq12452 89.7 1e-12 >seq9858 Length=44885 Score = 147 bits (162), Expect = 4e-30 Identities = 167/222 (75%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 241408 GTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATT 241467 ||| | ||| |||| ||| ||||| || |||||||| || ||||| | | ||||| Sbjct 11020 GTGGCTCAGCACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTGGCGGTGGA 10961 Query 241468 GGACAGTCCTGCGTTGTCAGACTT--GAGCACCTTCACTTTCTCCTCCAGCCGCGCGATG 241525 || ||| || ||| || | ||| ||| |||||| |||||||||||||||| |||| Sbjct 10960 GGCCAG--CTCCGTGTTCTGGCTTTTGAGACTCTTCACCTTCTCCTCCAGCCGCGAGATG 10903 Query 241526 CGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGT 241585 || ||||| || | | |||||| |||| ||| || | ||||||||| || | ||| || Sbjct 10902 CGCTCCAGCTTCCTCTTGCGGCACTTGGAGGCGGCGATGCGGTTCCGCAGCCGCTTGCGC 10843 Query 241586 TCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 |||||||||||||| ||||| ||||||||||| || ||| Sbjct 10842 TCCGCCTTGATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 10801 >seq8012 Length=78230 Score = 127 bits (140), Expect = 4e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 241430 AGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGAC 241489 || |||| |||||| ||||||| | | ||||| || ||| | ||||| | | Sbjct 49213 AGCTGGGTGACCTGGGCCCGCAGCAGGCTGGCGGTGGCGGCCAGCTCCGCGTTCTGCCCC 49154 Query 241490 TTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCAT 241549 || ||| ||||||| |||||||||||||||||||| || ||||| || ||||| ||||| Sbjct 49153 TTCAGCGCCTTCACCTTCTCCTCCAGCCGCGCGATCCGCTCCAGCTTCCGCCGCCGGCAC 49094 Query 241550 TTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCC 241609 |||| ||| || | ||||||||| || | ||| || || ||||| | || |||||| | Sbjct 49093 TTGGAGGCCGCGATGCGGTTCCGCAGCCGCTTCCGCTCGGCCTTCAGCCGCTCCTGGCTC 49034 Query 241610 TCCATGTCGATCGGAGAC 241627 ||| ||| | ||| ||| Sbjct 49033 TCCGCGTCCAGCGGCGAC 49016 >seq16337 Length=344012 Score = 105 bits (116), Expect = 1e-17 Identities = 125/165 (76%), Gaps = 6/165 (4%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| || || ||||||||||||||||| |||||| ||||||||||| ||| Sbjct 239913 GTGTACTCCACTATTTCTGTGCACAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGG 239972 Query 213588 TTTGACTTTGC-GTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| ||| | || ||| |||||||| |||||||| |||| ||||||||| ||| Sbjct 239973 -TTGCTTTTCCTATTACAAGAGTCCTTGTACAGCATGTAAGGGGTCCCGGTCTCGGTCTG 240031 Query 213647 GGACACCAGTATCTGGC--TCCAGAGGTACCTGGCCTTGACCACC 213689 ||| | | | |||| |||||| | | |||||| |||||| Sbjct 240032 AGACTCTATGA--TGGCATACCAGAGCTGCTGGGCCTTCACCACC 240074 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 213821 CATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCAC 213880 |||||| || || || | ||| || || ||| |||||||||| | | ||| ||| Sbjct 241652 CATGAAGAGATCGGGAATCCAGAGGGCAAAGAAGAGGTCCCTGGCTCGCTGCTCCTCCTT 241711 Query 213881 TCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTA 213940 |||| ||| || ||| || ||||| ||||| |||||| ||||| ||||| | ||| Sbjct 241712 GCCAGTGTTCTTCTTCAGGTCAAGAAACTCAAAAATGTCCAAATGCCATGGCTCAAGGTA 241771 Query 213941 GATGGCAAAGGCGCCCGGCCTCT 213963 |||||||||||| || || |||| Sbjct 241772 GATGGCAAAGGCCCCGGGTCTCT 241794 Score = 84.2 bits (92), Expect = 4e-11 Identities = 139/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 213140 GCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTC 213199 ||||||||| || |||| ||| | ||||| ||| ||||||||||| ||||| || || Sbjct 237039 GCCTTTGCTGACAGGGCAGCCTTCGTAAGTTTCGTATGGGCCATGCTCTTTGGCGAGTTC 237098 Query 213200 GCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTT 213259 ||| | | || ||| | || || ||||| || || |||| | ||| | | || Sbjct 237099 ACAGCTGGATTCCAAAGCACCATAATAAATGGTCTCGAAGATCTGCTGGTTCAACAACTG 237158 Query 213260 GGCCTCTGGGGACGTGAA--GGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGG 213317 |||||| |||| | || ||| ||| |||| | |||| |||| ||||| ||||| Sbjct 237159 GGCCTC-GGGGCTTTCAAAGGGGTATC-TCATCAGGATGAACGCATCCGCCAGACCCTGC 237216 Query 213318 ACCCCGATGCCGATGGG 213334 || || ||||| ||||| Sbjct 237217 ACTCCAATGCCAATGGG 237233 >seq12452 Length=479537 Score = 89.7 bits (98), Expect = 1e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 || || ||||| |||||| | |||||||| || |||||||| | ||||||| || Sbjct 148886 TCATCTCGGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATCAGACCCCTCTTCTTC 148945 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 ||||| || || || || ||||| || ||||||||||| || |||||||| || || || Sbjct 148946 AGCCAAAATATAGCAGCAAAAGAACCTGAGAAGAAGATCCCTTCCACTGCAGCAAAGGC 149004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931280308034560