Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq9029 125 5e-23 seq5388 91.5 1e-12 >seq9029 Length=2188355 Score = 125 bits (138), Expect = 5e-23 Identities = 233/337 (69%), Gaps = 4/337 (1%) Strand=Plus/Plus Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546 ||||| | || |||||||||||||| ||||| | || || ||| ||||| | | | Sbjct 975139 CGTCTCCGCACGGCTTGTGAACGTGCAAAGCGTACCCTCTCCTCTAGCACTCAGGCCAGT 975198 Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAA 475606 |||| |||| ||||| | ||| || ||||||| | | || ||||| || ||| Sbjct 975199 ATTGAGATTGACTCTCTCTATGAGGGCATTGATTTTTACACCTCAATTACCAGAGCTCGT 975258 Query 475607 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTC 475666 |||||||| | | ||||| | || | || | || ||||| || | | || Sbjct 975259 TTTGAAGAGTTAAATGCTGATTTGTTCCGTGGCACTCTGGATCCCGTGGAGAAGGCCCTG 975318 Query 475667 AGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACA 475726 | ||| | ||||| ||||||||||| ||||||| ||||| || || || || || || Sbjct 975319 CGGGATGCCAAACTAGACAAATCACAGATCCATGATATTGTACTGGTTGGTGGGTCTACC 975378 Query 475727 AGAAT-TCCAAAAATAAGAGAAATGCTTTCATCATAT-TTTAATGGTAAAAAGTTAAATG 475784 |||| |||| | | ||| || ||| | || || | || ||||| ||| || | ||| Sbjct 975379 CGAATCCCCAAGATTCAGA-AACTGC-TGCAGGATTTCTTCAATGGCAAAGAGCTGAATA 975436 Query 475785 AAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGC 475821 | || | ||||||||||||||||| || ||||| || Sbjct 975437 AGAGCATCAATCCTGATGAAGCTGTGGCTTATGGTGC 975473 Score = 107 bits (118), Expect = 1e-17 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 || ||| |||| || | || || ||||| || || ||||| || || || || || || Sbjct 974660 GTTACTAATGCTGTGGTCACAGTACCAGCCTACTTCAATGACTCCCAGCGCCAGGCCACA 974719 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 |||||||| |||| ||||||||||| ||||| | || || || |||||||| ||||| Sbjct 974720 AAAGATGCTGGAACCATTGCAGGTCTCAATGTGCTCCGGATCATCAATGAACCGACAGCT 974779 Query 474848 GCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || ||||||||||| | || ||||| Sbjct 974780 GCTGCTATTGCTTATGGTTTGGACAAGAA 974808 >seq5388 Length=438609 Score = 91.5 bits (100), Expect = 1e-12 Identities = 120/161 (75%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 627729 ATCTCTAAAATTATA-AAATGCATAACAATAAGATTTATCACCATCACGTCCTGCTCTAC 627787 ||| ||| || | || ||| ||| |||| | ||| |||||||| ||||| ||||| | Sbjct 368301 ATCACTATAACTGTAGAAAAGCA-AACAGTGAGAAACTTCACCATCTCGTCCAGCTCTGC 368243 Query 627788 CTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCAT-AATGTATTACTGCTCTC 627846 | |||||||||||||||||| ||| |||||| | | || ||| || || | Sbjct 368242 CAGATTCTTGATAATAACCTTCCATAGATTTAGG-GAGAGATGCATGAATAACATAGCGT 368184 Query 627847 ACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGC 627887 ||||||| ||||| ||| ||||| ||||| ||||||||||| Sbjct 368183 ACATCTGGTTTATCAATTCCCATGCCAAAAGCAATTGTTGC 368143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267249068029232