Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq11058 172 6e-38 seq4974 129 7e-25 >seq11058 Length=1707512 Score = 172 bits (190), Expect = 6e-38 Identities = 638/990 (64%), Gaps = 15/990 (2%) Strand=Plus/Plus Query 160049 TCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATT 160108 || || || ||| |||| || || | || || |||||| || || || || || Sbjct 1685946 TCTCAAATATTCTTCCAAGCACTGAATTGCAAAGGGGTCAACATCAGTATCAAACTTGTT 1686005 Query 160109 TGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCA 160168 || || | ||||| ||||||| ||||||| || |||||| || ||||| || Sbjct 1686006 GGCAAATAAGTGGTGT---TTCTGTAACATCCAGTTCAAGTCTCCCACACCAAACACACA 1686062 Query 160169 GACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACC 160228 || || || | || | || ||||| || || || | || ||||| | || || || Sbjct 1686063 CACAGAGCGCACATGAATTCCATTGCACGGAGGATAGGGGGCACCTTTTGAAACATCCCC 1686122 Query 160229 TTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTT 160288 ||| | || |||||||||||||| ||||| | || | |||||| || || || || Sbjct 1686123 TTCAAAATAATGCCACTTCACAAATCTGGCAAGAGCATTCATGTCAGAAACATCATACTT 1686182 Query 160289 GTACATCAG-GGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGT 160347 || || || | ||| || || || || | || || | || | || ||||||| || Sbjct 1686183 GT-CACTAGAAGAAACTGCCCCTGGGACTTCAGGGATTCTTTGAATAGTAGCCCACAAGT 1686241 Query 160348 GTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCC 160407 ||| || ||||| || ||||| |||| |||||| || || || |||| |||| Sbjct 1686242 ATTCATCAGGGCTATAAGTGTCTTTAGCCCATTCAATAAATTCAAGGATTTTGCTGTTTT 1686301 Query 160408 GCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCG 160467 || || | || | || | | ||||| || || ||||| ||||| | | Sbjct 1686302 CTAGCACATACTCTACAAATCTCCTACTAGCAACAAAATAGGCACTGCCAGAGAAAACAG 1686361 Query 160468 GTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCA 160527 |||| | ||| || | | |||||| || |||| | | || | || | Sbjct 1686362 GTATACTAAGAGGTGGAGGTTGTTTGTCTATTCCCATGTTCTTTAGCTTACCATCAACAA 1686421 Query 160528 GCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGC--GGTGGCATGCGTTCCGTCTCTAG 160585 | | | || ||||| | | |||| ||| | ||||| || || |||| Sbjct 1686422 TTTCATAGTGTTTTTTCCATC-GTATTTCTT-TGCTGGAAGGCATTTTCTCAGTTTCTAA 1686479 Query 160586 ACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGG 160645 ||||| |||| | || | ||||| | || || || || |||| ||||| | || Sbjct 1686480 GCTGTTTTCACCCTTTAGGGCTTTCAATTTCTCCACCATTTCCTGGTTGGTCTTAATAGG 1686539 Query 160646 AAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTC 160705 |||||| |||| || | ||||||| || ||||| || | || || || || Sbjct 1686540 AAAGTCCATACCACAAAGATTTATCAAATATTTCCAGTTTGTACTTCTCCTGTAGAGATC 1686599 Query 160706 CCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAG 160765 ||||||| || | |||||||| || | |||||| ||||| |||||||| |||| | Sbjct 1686600 TTTCATGCAGTTGAGGTCTGCCTGTACCCTGCTCCACGAAGCATACACTACACTCTCCAA 1686659 Query 160766 TTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCC---ACCACCGCCAGAAA 160822 || ||||| | |||||| |||| |||||| ||||| |||||| || | |||||||| Sbjct 1686660 TTGGCTGGCAATAAAGACATTATTGAAACAGGACACAATTCCCTTAACTGCTGCCAGAAA 1686719 Query 160823 GAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882 | ||| | |||| ||| || || | ||| || |||||||| || ||||| Sbjct 1686720 -AGTTTCT--GGAGACTTTTTGTCAACATGAATGCAGTAATAATTCTGAGGAGCATAGAT 1686776 Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942 | || || | || || | ||| ||||| || |||| | ||| || || ||||| || Sbjct 1686777 TGATCTTAGAAGTCTATCAAGCATGTCTATTTTGTGATATACCACTATTGAATAGGCAAT 1686836 Query 160943 CGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAA 161002 ||||| | | || || ||| || | | | | || || ||| ||||| |||| Sbjct 1686837 TGGAAATCCAGCTTCTTCTTTACTGAGAGGTTCCATAATATATTTCCGCATCTTGGTAAA 1686896 Query 161003 ATAATCACAATCCCGCGTCATGTTGATATA 161032 | | ||||||| ||||| || || || Sbjct 1686897 AGAGGCACAATCTGTTGTCATATTAATGTA 1686926 >seq4974 Length=20907 Score = 129 bits (142), Expect = 7e-25 Identities = 236/343 (69%), Gaps = 2/343 (1%) Strand=Plus/Plus Query 160619 GACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTT 160678 ||| ||||| ||| || |||| || || ||||| ||||| ||||| | ||| | Sbjct 15803 GACAATCTCGGCGTTAGTTTTGATGGGGAAATCGGTGCCGCAAGTGTTTAAGAGATACCT 15862 Query 160679 CCATTTCGCGCTCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCT 160738 ||| | || | | | | || ||| |||||| || | || || || || ||| Sbjct 15863 CCAGGGCACGTTGCTCTTGAGTAGCTCCTCCATGCAGTTCAGGTCCGCTTGGACCCGGGA 15922 Query 160739 CCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGA 160798 |||||| ||||||||||| |||| |||||| ||||||||||||| || ||||| || || Sbjct 15923 CCAGGATGCGTACACTACTCTCTCCAGTTTAGTGGCCACAAAGACATTTTCGAAGCAGGA 15982 Query 160799 CACGATTCCCACCACCGCCAGAAAGAACATCTTATCCGCCTTTC-GGTCCACGTGCACGC 160857 |||| || || ||| ||| || | | |||| | || ||||| || | Sbjct 15983 GGCGATCCCTCGGACTGCCTCCTTGAA-TTCGTCCGGGGATTTCAGATCTACGTGGACAC 16041 Query 160858 AATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTAT 160917 | || | ||||| |||| |||||||| ||| | ||| || ||||||||||| ||||| | Sbjct 16042 AGTATATATTCTGGGGCGTGTAGATGGACCTTAACAATCTTTCGAACATCTCAATCTTCT 16101 Query 160918 GATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTC 160960 ||| | || || || || || || ||||| || |||||| Sbjct 16102 CATGCACTACCATGGAATATGCAATAGGAAAATCTTCCTCCTC 16144 Score = 82.4 bits (90), Expect = 9e-11 Identities = 219/334 (66%), Gaps = 3/334 (1%) Strand=Plus/Plus Query 160050 CGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTT 160109 || |||| ||| |||||||| |||| ||| | || || | | ||| || || || Sbjct 15240 CGTAGATATTCCTCCAGACACTGGATTGCGTTTTCATCTACATTTGGGTCAAACTTGTTG 15299 Query 160110 GCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAG 160169 || | |||||| || ||| || || |||||||| | || || ||| |||| ||| Sbjct 15300 GCTAGCAGATGATG---GTTTTGGAGCATCCAGTGAAGATCACCTACCCCATACACACAG 15356 Query 160170 ACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCT 160229 |||| ||| ||| | || | || || ||||| | || ||||| || || || Sbjct 15357 ACGGCCCGTTGGTGGGCACCCGTACACGGAGGGTAGGGTGCCCCTTTGCTGACATCGCCC 15416 Query 160230 TCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTG 160289 || ||| ||||||||| || || || | || | | || ||| || || || Sbjct 15417 TCCAGGTAGGACCACTTCACCAATCTAGCAACAGCATTGACATCAGAGACCTCATACTTA 15476 Query 160290 TACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGT 160349 | | || || | || || | ||| ||||| || || ||||||||||| | | | Sbjct 15477 TCGTTATAAGGCACCGATCCTGGCATGCCTGGCATCCGGTGGAGGGTGGCCCAAATATAT 15536 Query 160350 TCGTCGGGGCTGTACGTGTCCTTAGACCATTCCA 160383 || || |||||||| || || || ||||| |||| Sbjct 15537 TCATCTGGGCTGTAAGTATCTTTTGACCACTCCA 15570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577062744735840