Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq10790 93.3 6e-14 >seq10790 Length=1503029 Score = 93.3 bits (102), Expect = 6e-14 Identities = 124/171 (73%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 155809 ATTTATGTA-ATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTA 155867 |||| |||| | |||||||| || ||| | ||||| ||||| || ||||| || || || Sbjct 359746 ATTTTTGTACAGAAAATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTA 359805 Query 155868 GAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGC 155927 ||||| || || | ||| || || || ||||| || || ||||||||| Sbjct 359806 GAAGTAGAGCCCAGCGACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGC 359865 Query 155928 ATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || |||||||| || || || |||| | |||||| |||||||| |||||| Sbjct 359866 ATTCCTCCAGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGAT 359916 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| ||||| || ||||| || || ||||||| || Sbjct 361798 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGC 361857 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || ||||| ||||| ||||||||||| |||||||| || Sbjct 361858 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 361917 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || |||| | |||||| |||||||| |||||| Sbjct 361918 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGAT 361953 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| ||||| || ||||| || || ||||||| || Sbjct 362026 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGC 362085 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || ||||| ||||| ||||||||||| |||||||| || Sbjct 362086 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 362145 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || |||| | |||||| |||||||| |||||| Sbjct 362146 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGAT 362181 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| ||||| || ||||| || || ||||||| || Sbjct 362480 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGC 362539 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || ||||| ||||| ||||||||||| |||||||| || Sbjct 362540 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 362599 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || |||| | |||||| |||||||| |||||| Sbjct 362600 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGAT 362635 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| ||||| || ||||| || || |||| || || Sbjct 360664 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAGGTAGAGCCCAGC 360723 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || ||||| ||||| ||||||||||| |||||||| || Sbjct 360724 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 360783 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || |||| | |||||| |||||||| |||||| Sbjct 360784 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGAT 360819 Score = 84.2 bits (92), Expect = 3e-11 Identities = 113/156 (72%), Gaps = 1/156 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| ||||| || ||||| || || ||||||| || Sbjct 360892 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGC 360951 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || ||||| ||||| ||||||||||| |||||||| || Sbjct 360952 GACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 361011 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 | ||| |||| | |||||| |||||||| |||||| Sbjct 361012 C-AAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGAT 361046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731673626094400