Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq6255 150 2e-30 seq15516 111 2e-18 seq13413 95.1 1e-13 seq6109 93.3 5e-13 seq2421 89.7 6e-12 >seq6255 Length=103889 Score = 150 bits (166), Expect = 2e-30 Identities = 154/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || ||| ||| | |||||||||||||||||||||||| || | | ||| | Sbjct 30372 TGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGAGGTGATGG 30431 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| | |||||||| || ||||| ||||||| |||| |||| Sbjct 30432 TGGAGCGCTTGTTGTAATGCGCCAGGCGAGACGCCTCCCCAGCGATGCGCTCGAAGATGT 30491 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 | ||||| || |||||||||| ||| | |||| |||||||| ||||||||| | Sbjct 30492 CATTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAAGAGATGCCGGTGTCGGGGTGAA 30551 Query 1254526 CCTGCTTGAGCACCTTGTAGA 1254546 ||||||| ||||||||||||| Sbjct 30552 CCTGCTTCAGCACCTTGTAGA 30572 Score = 150 bits (166), Expect = 2e-30 Identities = 154/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || ||| ||| | |||||||||||||||||||||||| || | | ||| | Sbjct 57711 TGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGAGGTGATGG 57652 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| | |||||||| || ||||| ||||||| |||| |||| Sbjct 57651 TGGAGCGCTTGTTGTAATGCGCCAGGCGAGACGCCTCCCCAGCGATGCGCTCGAAGATGT 57592 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 | ||||| || |||||||||| ||| | |||| |||||||| ||||||||| | Sbjct 57591 CATTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAAGAGATGCCGGTGTCGGGGTGAA 57532 Query 1254526 CCTGCTTGAGCACCTTGTAGA 1254546 ||||||| ||||||||||||| Sbjct 57531 CCTGCTTCAGCACCTTGTAGA 57511 Score = 150 bits (166), Expect = 2e-30 Identities = 154/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || ||| ||| | |||||||||||||||||||||||| || | | ||| | Sbjct 66366 TGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGAGGTGATGG 66307 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| | |||||||| || ||||| ||||||| |||| |||| Sbjct 66306 TGGAGCGCTTGTTGTAATGCGCCAGGCGAGACGCCTCCCCAGCGATGCGCTCGAAGATGT 66247 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 | ||||| || |||||||||| ||| | |||| |||||||| ||||||||| | Sbjct 66246 CATTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAAGAGATGCCGGTGTCGGGGTGAA 66187 Query 1254526 CCTGCTTGAGCACCTTGTAGA 1254546 ||||||| ||||||||||||| Sbjct 66186 CCTGCTTCAGCACCTTGTAGA 66166 Score = 147 bits (162), Expect = 3e-29 Identities = 154/201 (77%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || ||| ||| | |||||||||||||||||||||||| || | | ||| | Sbjct 23436 TGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCGGTCTGGATCTC-CGGGAGGTGATGG 23494 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| | |||||||| || ||||| ||||||| |||| |||| Sbjct 23495 TGGAGCGCTTGTTGTAATGCGCCAGGCGAGACGCCTCCCCAGCGATGCGCTCGAAGATGT 23554 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 | ||||| || |||||||||| ||| | |||| |||||||| ||||||||| | Sbjct 23555 CATTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAAGAGATGCCGGTGTCGGGGTGAA 23614 Query 1254526 CCTGCTTGAGCACCTTGTAGA 1254546 ||||||| ||||||||||||| Sbjct 23615 CCTGCTTCAGCACCTTGTAGA 23635 >seq15516 Length=840103 Score = 111 bits (122), Expect = 2e-18 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| | ||| ||| | |||||||||||||||||||||||| | | | ||| | Sbjct 336392 TGGCCAGCGCCCCGGGCAGCAGCAGGCGCACGGCGGTCTGGATCTCTTGGGAGGTGATGG 336333 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| | |||| || || ||||| | |||| |||| |||| Sbjct 336332 TGGAGCGCTTGTTATAATGCGTCAAGCGAGATGCCTCCCCAGCAATGCACTCGAAGATGT 336273 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 | ||||| || |||||||||| ||| | || |||||||| ||||||||| | Sbjct 336272 CATTGACGAAGGAGTTCATGATGCCCATGGCTTTAGAAGAGATGCCGGTGTCGGGGTGAA 336213 Query 1254526 CCTGCTTGAGCACCTTGTAGA 1254546 ||||||| ||||||| ||||| Sbjct 336212 CCTGCTTCAGCACCTGGTAGA 336192 >seq13413 Length=42068 Score = 95.1 bits (104), Expect = 1e-13 Identities = 100/128 (78%), Gaps = 4/128 (3%) Strand=Plus/Plus Query 509035 GCCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGAT 509094 ||| |||||||| ||||||||| ||||| ||| | |||||| | | |||| | Sbjct 23499 GCCGGAGAGCCGGGGCTTTGTGGAGAACTCCTACCTGGCCGGCCTGACGCCCACCGAGTT 23558 Query 509095 GTTTCTGCACATG--ATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCC 509152 || || | |||| || |||||||||||||||||| ||||||||||||||||||| ||| Sbjct 23559 CTT-CTTC-CATGCCATGGGCGGGCGCGAGGGCCTCATCGACACGGCCGTCAAGACAGCC 23616 Query 509153 GAGACGGG 509160 ||||| || Sbjct 23617 GAGACCGG 23624 Score = 89.7 bits (98), Expect = 6e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 |||||||||||| |||||| ||||||||||| |||| ||| | |||||| | |||||| Sbjct 28254 CGTCATCTCCTTCGACGGCTCCTACGTCAACTACCGGCACCTGGCGCTGCTCTGCGACAC 28313 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGC 512161 |||| |||||| || | ||||| |||| || ||||| |||||||| Sbjct 28314 CATGACCTGCCGTGGGCACCTCATGGCCATCACCCGGCACGGGGTCAACCGC 28365 >seq6109 Length=206988 Score = 93.3 bits (102), Expect = 5e-13 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || || ||| | ||||||||| |||||||||||||| || | ||| | Sbjct 102352 TGGCCAGCTCCCCCGGCAGAAGCAGGCGCACAGCGGTCTGGATCTCCCGGGAAGTGATAG 102411 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 | |||||||| | || ||||| || || || | ||||| |||| |||| Sbjct 102412 TTGAACGCTTGTTGTAATGAGCCAGGCGAGATGCTTCCCCCGCAATGCGCTCGAAGATGT 102471 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 |||| || || |||||||||| | ||| | ||| |||||| || ||| ||||| | Sbjct 102472 CGTTCACGAAGGAGTTCATGATCCCCATGGCCTTAGAGGAGATACCGGTGTCCGGGTGAA 102531 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 | || || ||||| ||||| Sbjct 102532 CTTGTTTCAGCACTTTGTA 102550 >seq2421 Length=294030 Score = 89.7 bits (98), Expect = 6e-12 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || || ||| | ||||||||| |||||||||||||| || | ||| | Sbjct 39751 TGGCCAGCTCCCCCGGCAAAAGCAGGCGCACAGCGGTCTGGATCTCCCGAGAAGTGATGG 39692 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 | ||||||||| | || |||| ||| || || |||| || |||| |||| Sbjct 39691 TCGAGCGCTTGTTGTAATGTGCCAAACGAGACGCTTCCCCAGCGATACGTTCGAAGATGT 39632 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 |||| ||||| |||||||||| | ||| | || |||||| || ||| || || | Sbjct 39631 CGTTTACAAAGGAGTTCATGATCCCCATGGCTTTAGAGGAGATACCGGTGTCAGGATGAA 39572 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 | ||||| | || ||||| Sbjct 39571 CTTGCTTCAATACTTTGTA 39553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105359709413828