Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq10790 149 5e-31 >seq10790 Length=1503029 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| |||||||| ||||| || || ||||||||||| || ||||| || || | Sbjct 362706 CCGCCCCTTAAACGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 362647 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || || || ||| | |||| || ||||| || || ||| Sbjct 362646 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 362587 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||||||||| | ||| |||||| | || | ||||| | |||||| Sbjct 362586 ATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACT 362527 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || |||||||| || |||||||| ||||| |||||||| Sbjct 362526 TCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 362480 Score = 136 bits (150), Expect = 3e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| ||||| || || ||||||||||| || ||||| || || | | |||||| | Sbjct 359975 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 359916 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || || ||| | |||| || ||||| || || ||||| || |||||| Sbjct 359915 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 359856 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||| |||||| | || | ||||| | |||||||| || || || Sbjct 359855 TCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATG 359796 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 |||||||| || |||||||| ||||| ||||||||||| Sbjct 359795 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATTTT 359758 Score = 136 bits (150), Expect = 3e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| ||||| || || ||||||||||| || ||||| || || | | |||||| | Sbjct 362012 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 361953 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || || ||| | |||| || ||||| || || ||||| || |||||| Sbjct 361952 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 361893 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | ||| |||||| | || | ||||| | |||||||| || || || Sbjct 361892 TCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATG 361833 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || |||||||| ||||| |||||||| Sbjct 361832 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 361798 Score = 136 bits (150), Expect = 3e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| ||||| || || ||||||||||| || ||||| || || | | |||||| | Sbjct 362240 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 362181 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || || ||| | |||| || ||||| || || ||||| || |||||| Sbjct 362180 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 362121 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | ||| |||||| | || | ||||| | |||||||| || || || Sbjct 362120 TCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATG 362061 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || |||||||| ||||| |||||||| Sbjct 362060 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 362026 Score = 132 bits (146), Expect = 4e-26 Identities = 159/215 (74%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| ||||| || || ||||||||||| || ||||| || || | | |||||| | Sbjct 361331 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 361272 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || || ||| | |||| || ||||| || || ||||| || |||||| Sbjct 361271 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 361212 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| |||| |||||| | || | ||||| | |||||||| || || || Sbjct 361211 TCTTG-GATTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATG 361153 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || |||||||| ||||| |||||||| Sbjct 361152 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 361118 Score = 131 bits (144), Expect = 1e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| ||||| || || ||||||||||| || ||||| || || | | |||||| | Sbjct 360878 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 360819 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || || ||| | |||| || ||||| || || ||||| || |||||| Sbjct 360818 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 360759 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | ||| |||||| | || | ||||| | ||||| || || || || Sbjct 360758 TCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACCTCTAGGGTGATG 360699 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || |||||||| ||||| |||||||| Sbjct 360698 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 360664 Score = 129 bits (142), Expect = 5e-25 Identities = 159/215 (74%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| ||||| || || ||||||||||| ||| |||| || || | | |||||| | Sbjct 361104 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGA-TGTTGTAGTCGGACAGGGTGCGCCCA 361046 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || || ||| | |||| ||| |||| || || ||||| || |||||| Sbjct 361045 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTT-GCTGGTCTGGAGGAATGCCTTCTTTG 360987 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | ||| |||||| | || | ||||| | |||||||| || || || Sbjct 360986 TCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATG 360927 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || |||||||| ||||| |||||||| Sbjct 360926 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 360892 Score = 129 bits (142), Expect = 5e-25 Identities = 159/215 (74%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| ||||| || || ||||||||||| || ||||| || || | | |||||| | Sbjct 362466 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 362407 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || || ||| | |||| || ||||| || || ||||| || |||||| Sbjct 362406 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 362347 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| ||||| |||||| | || | ||||| | ||||| || || || || Sbjct 362346 TCTTG-GATTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTAC-TCTAGGGTGATG 362289 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || |||||||| ||||| |||||||| Sbjct 362288 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 362254 Score = 127 bits (140), Expect = 2e-24 Identities = 159/216 (74%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| ||||| || || ||||||||||| || ||||| || || | | |||||| | Sbjct 360650 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 360591 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || || ||| | |||| || ||||| || || ||||| || |||||| Sbjct 360590 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 360531 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| | ||||| | |||||| | || | ||||| | ||||| || || || || Sbjct 360530 TCTGG--ATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACCTCTAGGGTGAT 360473 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || |||||||| ||||| |||||||| Sbjct 360472 GGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 360437 Score = 123 bits (136), Expect = 2e-23 Identities = 158/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| ||||| || || ||||||||||| || ||||| || || | | |||||| | Sbjct 360200 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 360141 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || || ||| | |||| || ||||| || || ||||| || |||||| Sbjct 360140 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 360081 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | ||| |||||| | || | ||||| | |||||||| || || || Sbjct 360080 TCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAG-GTGATG 360022 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || |||| ||| ||||| |||||||| Sbjct 360021 GTTTTGCCCGTCAAGG-TTTCACAAAGATCTGCAT 359988 Score = 123 bits (136), Expect = 2e-23 Identities = 159/216 (74%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| ||||| || || ||||||||||| || ||||| || || | | |||||| | Sbjct 361557 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 361498 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || || ||| | |||| || ||||| || || ||||| || |||||| Sbjct 361497 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 361438 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| | ||||| | |||||| | || | ||||| | ||||| || || || || Sbjct 361437 TCTGG--ATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTAC-TCTAGGGTGAT 361381 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || |||||||| ||||| |||||||| Sbjct 361380 GGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 361345 Score = 113 bits (124), Expect = 3e-20 Identities = 157/215 (73%), Gaps = 5/215 (2%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| ||||| || || ||||||||||| || ||||| || || | | |||||| | Sbjct 360423 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCG-CCA 360365 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || || ||| | |||| || ||||| || || ||||| || |||||| Sbjct 360364 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 360305 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||| | |||| |||||| | || | ||||| | ||||| || || || || Sbjct 360304 TCTGG--ATTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTAC-TCTAGGGTGATG 360248 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || |||||||| ||||| |||||||| Sbjct 360247 GTTTTGCC-GTCAAGGTTTTCACAAAGATCTGCAT 360214 Score = 102 bits (112), Expect = 6e-17 Identities = 158/219 (72%), Gaps = 9/219 (4%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| ||||| || || ||||||||||| || ||||| || || | | |||||| | Sbjct 361784 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 361725 Query 29632 TCATCGAGTTGTTTGCCAGCA---TATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 || || || || || || ||| | |||| || ||||| || || ||||| || ||| Sbjct 361724 TCTTCCAGCTGCTTTCCGGCAAGCAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCT 361665 Query 29689 TTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGT 29747 |||||| | ||||| | |||||| | || | ||||| | ||||| || || || Sbjct 361664 TTGTCTGG--ATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTAC-TCTAGGGT 361608 Query 29748 TATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| || |||| ||| ||||| |||||||| Sbjct 361607 GATGGTTTTGCC-GTCAAGG-TTTCACAAAGATCTGCAT 361571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385117396677444