Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq9029 136 3e-26 >seq9029 Length=2188355 Score = 136 bits (150), Expect = 3e-26 Identities = 364/549 (66%), Gaps = 8/549 (1%) Strand=Plus/Minus Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 |||||||| || ||||||||||||||||| | | | ||| || | ||| |||||||| Sbjct 975473 GCACCATAAGCCACAGCTTCATCAGGATTGATGCTCTTATTCAGCTCTTTGCCATTGAAG 975414 Query 281837 AAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 |||| || |||| ||| | ||| || || || | || || ||||| | |||||| Sbjct 975413 AAATCCTGCAGCAGTT-TCTGAATCTTGGGGATTCGGGTAGACCCACCAACCAGTACAAT 975355 Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955 ||||| | ||||||||| || ||||| | |||| | | || || ||||| || || Sbjct 975354 ATCATGGATCTGTGATTTGTCTAGTTTGGCATCCCGCAGGGCCTTCTCCACGGGATCCAG 975295 Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 282015 | | | ||||| || | | | ||||| || |||||| |||| | | | Sbjct 975294 AGTGCCACGGAACAAATCAGCATTTAACTCTTCAAAACGAGCTCTGGTAATTGAGGTGTA 975235 Query 282016 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 282075 | ||||||| || || | | ||| |||| ||||| | | ||||| ||| || || Sbjct 975234 AAAATCAATGCCCTCATAGAGAGAGTCAATCTCAATACTGGCCTGAGTGCTAGAGGAGAG 975175 Query 282076 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGAT-TGAT 282134 | ||| || ||||||||||| || || | || | || | || | | || | | | Sbjct 975174 GGTACGCTTTGCACGTTCACAAGCCGTGCGGAGACGGCGAACTGC-TCTCTTGTTCTCAG 975116 Query 282135 TCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATT 282192 | | || | || | || | |||||| || ||| | ||| | || | ||| || Sbjct 975115 TAATGTCCTTCTTGTGCTTACGCTTGAATTCAGCAATGAA--ATGGTTGACCATACGGTT 975058 Query 282193 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 282252 |||||| || || || ||||| | |||| |||| || | |||||| || | || Sbjct 975057 ATCAAAGTCCTCCCCACCCAAGTGGGTATCACCTGCAGTTGACTTTACTTCAAAGATGCC 974998 Query 282253 ATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 282312 ||| |||| || | | | ||||||| || |||||||| | ||||| ||||| || Sbjct 974997 ATCCTCAATAGTGAGGATCGAAACATCAAAAGTGCCACCACCAAGGTCAAAGATAAGGAC 974938 Query 282313 ATTCATTTC 282321 |||| |||| Sbjct 974937 ATTCCTTTC 974929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739565807236584